BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330732

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46980.1 | Symbols:  | Plant invertase/pectin methylesterase...   259    1e-68


> AT5G46980.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr5:19065453-19066007 REVERSE 
LENGTH=555
Length=555

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 171/186 (92%), Gaps = 2/186 (1%)
 Strand=Plus/Plus

Query  36   ATATGCGGAACCATACACCTACAAATTTTGTATTACATCTATCAAAGAGAATCCAGAGAG  95
            |||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||
Sbjct  108  ATATGCGGAACCATACATTTACAAATTTTGTATCACATCCATCAAAGAGAATCCAGAGAG  167

Query  96   CCAAAAAGTAAGAAATGTAGATGAACTGACTGTGGTATGTACGAATAGCGCAATATCAAA  155
            |||||||||||||||| | |||||| |||||||||||||||| |||||||| ||||||||
Sbjct  168  CCAAAAAGTAAGAAATATTGATGAATTGACTGTGGTATGTACTAATAGCGCGATATCAAA  227

Query  156  CCTAACAAAAGTGAAAGGAATTGTAGAGAATATTTTAAACGAGAA-AAAGTATAAGAATA  214
            |||||||||||||||||||| ||||||||| ||||| || || || ||||||||||||||
Sbjct  228  CCTAACAAAAGTGAAAGGAACTGTAGAGAACATTTTGAATGA-AAGAAAGTATAAGAATA  286

Query  215  AGTTGA  220
            ||||||
Sbjct  287  AGTTGA  292


 Score =  193 bits (104),  Expect = 1e-48
 Identities = 119/126 (94%), Gaps = 2/126 (2%)
 Strand=Plus/Plus

Query  221  CTTGTGAAATGAAATTCAACGATGACAATCACCAAATATCTCCGGTGAAGAAAGAGAAC-  279
            |||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||| 
Sbjct  431  CTTGCGAAATGAAATTCAATGATGACAATCACCAGATATCTCCAGTGAAGAAAGAGAACG  490

Query  280  ATCGTTCTCTTCGACATGATCAACATTCCCTATTATTTTTGTTTCAATGCTCATATTAAC  339
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  491  AT-GTTCTCTTCGACATGATCAACATTCCGTATTATTTTTGTTTCAATGCTCATATTAAC  549

Query  340  GGCTAG  345
            ||||||
Sbjct  550  GGCTAG  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5