BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330738
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46915.1 | Symbols: | transcriptional factor B3 family prot... 508 3e-143
> AT5G46915.1 | Symbols: | transcriptional factor B3 family protein
| chr5:19051568-19053200 REVERSE LENGTH=867
Length=867
Score = 508 bits (275), Expect = 3e-143
Identities = 472/560 (84%), Gaps = 42/560 (8%)
Strand=Plus/Plus
Query 343 GATGGGAAGGAGATGATGCAACCTCCACAATCC-AGAGCCTTGTTGGCTTCTTCAAGTCG 401
|||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct 283 GATGGGAAGGAGATGATGCAACCTCCACAA-CCTAGAGCCTTCTTGGCATCTTCAAGTCG 341
Query 402 ---T------TTCAAAACTGAACAAGGGGAAGATGACAAGAAGGAAGAGGTGGTGTCTGA 452
| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TATTAGAAGATTCAGAACAGAACAAGGGGAAGATGACAAGAAGGAAGAGGTGGTGTCTGA 401
Query 453 GTTGAGTGATCGTGGCAGGACAACCGCAGCTGAATCTAATGGAAGAAAGCTCAACCTTAG 512
|| ||| |||||||| |||||||||||||||||||| |||||| |||||||| ||| |
Sbjct 402 GTCAAGTAATCGTGGCCGGACAACCGCAGCTGAATCTGTTGGAAGGAAGCTCAAACTTGG 461
Query 513 GAAGAAGGCAGCTGAGGAGTCCCAAGAATCTAAAAGGACCGAGAAA----TTAGGAGCCT 568
|||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 462 GAAGAAGGCAGCTGAGGAATCCCAAGAATCTAAAAGGACCGAGAAAGTGGTTA-GAGCCC 520
Query 569 TTTCA-TTG-GTCA--T---T-TTC-TCTACTGCTACAGAATTCACCAG-CTTATTCAAG 618
| || | || | | ||| ||||||||| |||||||| | | | ||||| ||
Sbjct 521 GAAGAGATGAGGCAGGTGCCTCTTCATCTACTGCTGTAGAATTCA-CGGCCGTATTCCAG 579
Query 619 CAAGGGTATCTC-A-AATTCCTGAGGCTCCGAACTTCTGTTGCTAAGGATCATATGCCGG 676
| || |||||| | || | |||||| |||||| ||||| | ||||||||| |||||||
Sbjct 580 CCAGCATATCTCTACAA-T-CTGAGGATCCGAAGTTCTG-T--TAAGGATCAAATGCCGG 634
Query 677 ATGAGAAAACAATGTTCAAAATCCATCACCCAAATGGGAAGAAATGTTGGGATGTGGTTT 736
|||||||||||| |||||| ||||||| |||||||||||||||| |||| ||||||| |
Sbjct 635 TTGAGAAAACAATATTCAAAGTCCATCATCCAAATGGGAAGAAATTTTGGAATGTGGTGT 694
Query 737 ATTTGGGGAGGTT-TGGAGTTTTCTCTGGTGGATGGTC-ACGTTTGGTTAAAGAGTATCC 794
|| |||||| ||| ||||| |||||||||||||||| | | |||||||||||||||||||
Sbjct 695 ATCTGGGGA-GTTATGGAGCTTTCTCTGGTGGATGG-CAATGTTTGGTTAAAGAGTATCC 752
Query 795 CCTTGTTGTTGGAGATA----CCTGCAAATTTACATTCATCAAACCAGAGGAGCTACTTC 850
|||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 753 CCTTGTTGTTGGGGATATATACCTGCAAGTTTACATTCATCAAACCGGAGGAGCTACTTC 812
Query 851 TAGTTGTCTCAAAACCCTAA 870
|||||||||| |||||||||
Sbjct 813 TAGTTGTCTCCAAACCCTAA 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5