BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330742

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46873.1 | Symbols:  | Defensin-like (DEFL) family protein |...   327    2e-89
  AT5G46877.1 | Symbols:  | Defensin-like (DEFL) family protein |...   230    7e-60


> AT5G46873.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:19021205-19021529 FORWARD LENGTH=216
Length=216

 Score =  327 bits (177),  Expect = 2e-89
 Identities = 201/213 (94%), Gaps = 0/213 (0%)
 Strand=Plus/Plus

Query  1    ATGAAATCAAACAAAGCGACCTTCTTCTTGGGCTTGTTCCTTGTATCTGCCTTCTGTATA  60
            ||||||||||||||||| |||||||||||||||||||| ||||||| ||| || ||||||
Sbjct  1    ATGAAATCAAACAAAGCAACCTTCTTCTTGGGCTTGTTGCTTGTATATGCTTTTTGTATA  60

Query  61   AGGTTGATAGAGAGTAGGTGTTACACAAACGACGATTGTAAAGACGCGCAACCATGTCCA  120
            | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct  61   ATGTTGATAGAGAGTAGGTGTTACACAAACGACGATTGCAAAGACGGGCAACCATGTCCA  120

Query  121  GTGCCTCTTGCTTGTCTATTTGGCAGCTGCATTTGTCCATGGAAAAGTCGATCTAAGTTA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct  121  GTGCCTCTTGCTTGTCTATTTGGCAGCTGCATTTGTCCATGGAAAAGTCAATCAAAATTA  180

Query  181  CCAATTTGTCAAATCATATGTGCGCATTTGGAT  213
            |||||||||||||||||||||||| ||||||||
Sbjct  181  CCAATTTGTCAAATCATATGTGCGAATTTGGAT  213


> AT5G46877.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:19025895-19026269 FORWARD LENGTH=264
Length=264

 Score =  230 bits (124),  Expect = 7e-60
 Identities = 222/268 (83%), Gaps = 12/268 (4%)
 Strand=Plus/Plus

Query  1    ATGAAATCAAACAAAGCGACCTTCTTCTTGGGCTTGTTCCTTGTATCTGCCTTCTGTATA  60
            ||||||||||||||||  || || ||||||||||||||||||||||||||||| ||| | 
Sbjct  1    ATGAAATCAAACAAAGTAACATTTTTCTTGGGCTTGTTCCTTGTATCTGCCTTTTGTGTT  60

Query  61   AGGTTGATAGAGAGTAGGTGTTACACAA-ACGACGATTG--TAAAG-ACGCGCAACCATG  116
            ||||||| ||||| || ||||| || || ||||||||||  ||||  | | | ||   ||
Sbjct  61   AGGTTGACAGAGAATATGTGTTTCA-AAGACGACGATTGCATAAACCAGGGGGAATGGTG  119

Query  117  TCCAGTGCCTCTTGCTTGT-CTATTTGGCAGC-TGCATTTGTCCATGGAAAAGTCGATCT  174
            |||||||| || || |||| | || || |||  |||||||||||||||  || |||||| 
Sbjct  120  TCCAGTGCTTCGTGTTTGTTC-ATATG-CAGAATGCATTTGTCCATGGGGAACTCGATCA  177

Query  175  AAGTTACCAATTTGTCAAATCATATGTGCGCATTTGGATAAAAGAGCTGGAAATTCTTAT  234
            |||||||||| |||||||||||||||||||||||| ||||||| | |||  |||||||||
Sbjct  178  AAGTTACCAAGTTGTCAAATCATATGTGCGCATTTAGATAAAAAATCTGTCAATTCTTAT  237

Query  235  GATCATACTTGTGGTTGCAACTATAAGT  262
             |||   |||||||||||||||||||||
Sbjct  238  AATC---CTTGTGGTTGCAACTATAAGT  262



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5