BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330772

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46530.1 | Symbols:  | AWPM-19-like family protein | chr5:18...   776    0.0  


> AT5G46530.1 | Symbols:  | AWPM-19-like family protein | chr5:18875525-18876898 
FORWARD LENGTH=644
Length=644

 Score =  776 bits (420),  Expect = 0.0
 Identities = 456/474 (96%), Gaps = 0/474 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGGAACAGCAGATGAAACCGGTGGCCTCTTTTCTTTTAGTTCTGAACTTTTGTATG  60
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  52   ATGGTGGAACATCAGATGAAACCGGTGGCCTCTTTTCTTTTAGTCCTGAACTTTTGTATG  111

Query  61   TATGCCATTGTTCTTGGAATTGGTGCATGGTCCATGAACAAAGCTATCAACCATGGCTTC  120
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  112  TATGCCATTGTTCTTGGAATTGGCGCATGGTCCATGAACAAAGCTATCAACCATGGTTTC  171

Query  121  CTTATTGGTGCGGATTATAGTCTTCCGGCTCATTTCTCGCCAATACATTTTCCAATGGGC  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  172  CTTATTGGTGCGGATTATAGTCTTCCGGCTCATTTCTCGCCGATACATTTTCCAATGGGT  231

Query  181  AATGCGGCCACCGGATTCTTCATTATGTTTGCTTTAATTGCTGGAGTTGCTGGAGCTGCC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  AATGCGGCCACCGGATTCTTCATTATGTTTGCTTTAATTGCTGGAGTTGCTGGAGCTGCC  291

Query  241  TCGGTTATCTCCGGCGTCAGTCATCTCCAATCATGGACTTCTACTAGTCTCCCAGCAGCT  300
            ||||||||||||||| ||||||||||||||||||||||  | ||||||||||| ||||||
Sbjct  292  TCGGTTATCTCCGGCATCAGTCATCTCCAATCATGGACAACGACTAGTCTCCCGGCAGCT  351

Query  301  GTCTCCGCCGCCACCATTGCTTGGTCGCTGACACTTTTAGCCATGGGATTTGGCTGCAAG  360
            ||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  352  GTCTCTGCCGCCACTATTGCTTGGTCGCTAACACTTTTAGCCATGGGATTTGGTTGCAAG  411

Query  361  GAAATTGAACTTGGGATGAGAAATGCTCGTCTGAGGACAATGGAGGCATTTCTAATAATA  420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  412  GAAATTGAACTTGGGATGAGAAATGCTCGTCTGAGGACAATGGAGGCATTTCTAATTATA  471

Query  421  CTTTCGGCAACACAACTTCTCTATATTGCTGCTATATACGGAGTTCGAAAATAA  474
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  472  CTTTCGGCAACACAACTTCTCTACATTGCTGCTATATACGGCGTTCGAAAATAA  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5