BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330831
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45830.1 | Symbols: DOG1, GSQ5, ATDOG1 | delay of germinatio... 1048 0.0
> AT5G45830.1 | Symbols: DOG1, GSQ5, ATDOG1 | delay of germination
1 | chr5:18589482-18591400 REVERSE LENGTH=1063
Length=1063
Score = 1048 bits (567), Expect = 0.0
Identities = 742/822 (90%), Gaps = 30/822 (4%)
Strand=Plus/Plus
Query 7 TCTTCAACAAAGAACATCGAACAAGCTCAAGAAAGTTGTTATCACGAGTGGATGAGTTTG 66
|||||| |||||||||||||||||||||||| | || ||||| ||||||||||||||||
Sbjct 7 TCTTCATCAAAGAACATCGAACAAGCTCAAG--A-TTCTTATCTCGAGTGGATGAGTTTG 63
Query 67 CAGTCTCAACGCATAAATGAGGTCAAACAACTCTTAGTTCAACGACGATCTCACCGCGAT 126
|| ||||||||||| |||| ||||||||||||||| |||||||||||||||| | |||
Sbjct 64 CAATCTCAACGCATCCCTGAGCTCAAACAACTCTTAGCTCAACGACGATCTCACGGTGAT 123
Query 127 GAAGA-ACACGATAAGAAGCTCCGTGAGTTAACGGGAAAGATCCTTGGAGATTTCAAAGA 185
||||| | | ||||| ||||| ||| ||||||||||||| ||| | || ||||||||| |
Sbjct 124 GAAGATA-ATGATAACAAGCTTCGTAAGTTAACGGGAAAAATCATCGGTGATTTCAAAAA 182
Query 186 TTATGCCGGAAAAAGAGCTGATCTTGCTCACCGATGTAGCTCGAACTATTATGCACCGAC 245
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 183 TTACGCCGCAAAAAGAGCTGATCTTGCTCACCGATGTAGCTCGAACTATTATGCACCCAC 242
Query 246 GTGGAATACTCGTTTAGAGAACGCTCTAATTTGGATGGGTGGTTGTCGACCATCTTCTTT 305
|||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GTGGAACAGTCCTTTAGAGAACGCTCTAATTTGGATGGGTGGTTGTCGACCATCTTCTTT 302
Query 306 CTTTAGGCTCATTTATGCTTTGTGTGGGTCACAAACTGAGATACGTGTGACTCAGTTTCT 365
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 303 CTTTAGGCTCGTTTATGCTTTGTGTGGGTCACAAACTGAGATCCGTGTGACTCAGTTTCT 362
Query 366 CCGCAACATCGACGGCTACGAATCTTCAGGTAGGGTTTTGGACGTTTTCGGTGGCGGCGG 425
||||||||||||||||||||||||||| | | | | |||||||||||
Sbjct 363 CCGCAACATCGACGGCTACGAATCTTC----A--------G--G---T-GGTGGCGGCGG 404
Query 426 TGGCGCATCACTTAGC-AATCTAAGTGCGGAGCAGCTAGCAAAAATCAATGTGTTACATG 484
| |||||||||||| | | ||||||||||||||||||| |||||||||||||| ||||
Sbjct 405 T---GCATCACTTAGCGACT-TAAGTGCGGAGCAGCTAGCTAAAATCAATGTGTTGCATG 460
Query 485 TAAAAATTATAGACGAAGAAGAGAAGATGACCAAGAAAGTCTCAAGCCTACAAGAAGACG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TAAAAATTATAGACGAAGAAGAGAAGATGACCAAGAAAGTCTCAAGCCTACAAGAAGACG 520
Query 545 CGGCGGATATTCCCATCGCCACTGTGGCTTACGAGATGGAGAATATCGGAGAGCCTAACA 604
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 521 CAGCGGATATTCCCATCGCCACTGTGGCTTACGAGATGGAGAATGTCGGAGAGCCTAACG 580
Query 605 TGGTGTTGGATCAAGCTTTCGACAAGCAAGAAGAAGCTATGGC-CGGTTTATTGGCCCAG 663
| ||| ||||||||||| ||||||||||||||||||||||||| || |||||||| | ||
Sbjct 581 TAGTGGTGGATCAAGCTCTCGACAAGCAAGAAGAAGCTATGGCTCG-TTTATTGGTCGAG 639
Query 664 GCCGATAATCTAAGGGTGGATACTTTAGCAAAGATCGTCGAGATTCTATCGCCGGTACAA 723
||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||||||
Sbjct 640 GCCGATAATCTAAGGGTTGATACTTTAGCGAAGATCCTCGGGATTCTATCTCCGGTACAA 699
Query 724 GCAGCGGATTTCTTACTCGCCGGGAAAAAGCTTCATCTTTCGATGCATGAGTGGGGAACT 783
| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 700 GGAGCGGATTTCTTGCTCGCTGGGAAAAAGCTTCATCTTTCGATGCATGAGTGGGGAACT 759
Query 784 ACGAGAGATCGTCGCCGTCGTGAATGTATGGTTGACGCCGAA 825
| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 760 ATGAGAGATCGTCGCCGTCGTGACTGTATGGTTGACACCGAA 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5