BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330836
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45780.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2894 0.0
> AT5G45780.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:18566812-18569625 REVERSE LENGTH=1979
Length=1979
Score = 2894 bits (1567), Expect = 0.0
Identities = 1754/1846 (95%), Gaps = 5/1846 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAtttttttgataaagtttctttttttAGGAATCTGGG--T-TTATTACTCTGTT 57
|||||||||| |||||| |||||||| |||||||||||||||| | |||||||||||||
Sbjct 1 ATGGAGATTTCTTTGATGAAGTTTCTGTTTTTAGGAATCTGGGTTTATTATTACTCTGTT 60
Query 58 CTTGATTCTGTTTTTGCAATGGATAGTCTCTTATCTCCAAAGGGTGTTAACTATGAAGTG 117
||||| ||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 CTTGACTCTGTTTCTGCCATGGATAGTCTTTTATCTCCCAAGGGTGTTAACTATGAAGTG 120
Query 118 GCTGCTTTAATGTCAGTGAAGAATAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGG 177
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGG 180
Query 178 GATATAAACTCTGTTGATCCTTGTACTTGGAACATGGTTGGTTGTTCCTCTCAAGGTTTT 237
||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 181 GATATTAACTCTGTTGATCCTTGTACTTGGAACATGGTTGGTTGTTCTTCTGAAGGTTTT 240
Query 238 GTGGTTTCTCTAGAGATGGCTAGTAAAGGATTATCAGGGATAATATCTACTAGTATTGGG 297
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 GTGGTTTCTCTAGAGATGGCTAGTAAAGGATTATCAGGGATACTATCTACTAGTATTGGG 300
Query 298 GAATTAACTCATCTTCATACTTTGTTACTTCAGAATAATCAGTTAACCGGTCCGATTCCT 357
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GAATTAACTCATCTTCATACTTTGTTACTTCAGAATAATCAGTTAACTGGTCCGATTCCT 360
Query 358 TCTGAGTTAGGCCAACTTTCTGAGCTTGAAACTCTTGATCTATCTGGGAACCGGTTTAGT 417
||||||||||||||||| |||||||||||||| |||||| |||| ||||| |||||||||
Sbjct 361 TCTGAGTTAGGCCAACTCTCTGAGCTTGAAACGCTTGATTTATCGGGGAATCGGTTTAGT 420
Query 418 GGAGAAATCCCAGCTTCTTTAGGGTTCTTGACTCACTTAAACTACTTGCGGCTAAGCAGG 477
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 421 GGTGAAATCCCAGCTTCTTTAGGGTTCTTAACTCACTTAAACTACTTGCGGCTTAGCAGG 480
Query 478 AATCTTTTATCCGGGCAGATTCCC-CACCTTGTCGCTGGCCTCTCAGGTCTTTCTTTCTT 536
||||||||||| ||||| | |||| ||||| |||||||||||||||||||||||||||||
Sbjct 481 AATCTTTTATCTGGGCA-AGTCCCTCACCTCGTCGCTGGCCTCTCAGGTCTTTCTTTCTT 539
Query 537 GGATCTATCTTTCAACAATCTAAGCGGACCAACTCCAAATATATTAGCAAAAGACTACAG 596
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 540 GGATCTATCTTTCAACAATCTAAGCGGACCAACTCCGAATATATCAGCAAAAGATTACAG 599
Query 597 GATTGTAGGAAATGCATTCCTTTGTGGTCCAGCTTCCCAAGAGCTTTGCTCAGATGCTGC 656
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 GATTGTAGGAAATGCATTTCTTTGTGGTCCAGCTTCCCAAGAGCTTTGCTCAGATGCTAC 659
Query 657 ACCTGTGAGAAATGCGACAGGCTTGTCTGAGAAGGACAATAGCAAACATCACAGCTTAGT 716
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 660 ACCTGTGAGAAATGCGACGGGTTTGTCTGAAAAGGACAATAGCAAACATCACAGCTTAGT 719
Query 717 GCTCTCTTTTGCATTTGGCATTGTTGTTGCCTTTATCTTCTCTTTAATCTTTCTCTTCTT 776
||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 720 GCTCTCTTTTGCATTTGGCATTGTTGTTGCCTTTATCATCTCCCTAATGTTTCTCTTCTT 779
Query 777 CTGGGTGCTTTGGCATCGATCACGTCTCTCAAGATCACACGTGCAGCAAGACTACGAATT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTGGGTGCTTTGGCATCGATCACGTCTCTCAAGATCACACGTGCAGCAAGACTACGAATT 839
Query 837 TGAAATCGGGCATCTGAAAAGGTTCAGTTTTCGCGAAATACAAACTGCAACGAGCAATTT 896
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 840 TGAAATCGGCCATCTGAAAAGGTTCAGTTTTCGCGAAATACAAACCGCAACAAGCAATTT 899
Query 897 TAGTCCGAAGAACATTTTGGGACAAGGAGGATTCGGGATGGTTTATAAAGGGTATCTCCC 956
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 900 TAGTCCAAAGAACATTTTGGGACAAGGAGGGTTTGGGATGGTTTATAAAGGGTATCTCCC 959
Query 957 AAATGGAACTGTGGTGGCGGTTAAAAGATTGAAAGATCCGAATTATACTGGAGAAGTTCA 1016
|||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||
Sbjct 960 AAATGGAACTGTGGTGGCAGTTAAAAGATTGAAAGATCCGATTTATACAGGAGAAGTTCA 1019
Query 1017 GTTTCAAACCGAAGTCGAAATGATTGGCTTAGCAGTTCATCGTAATCTTTTACGTCTCTT 1076
||||||||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 1020 GTTTCAAACCGAAGTAGAGATGATTGGCTTAGCTGTTCACCGTAACCTTTTACGCCTCTT 1079
Query 1077 TGGATTCTGTATGACACCAGAAGAGAGAATGCTCGTGTATCCTTATATGCCAAATGGAAG 1136
||||||||||||||| || |||||||||||||| |||||||| || ||||||||||||||
Sbjct 1080 TGGATTCTGTATGACCCCGGAAGAGAGAATGCTTGTGTATCCGTACATGCCAAATGGAAG 1139
Query 1137 CGTGGCTGATCGCCTGAGAGACAATTATGGAGAAAAGCCGTCTTTAGACTGGAATCGGAG 1196
||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1140 CGTAGCTGATCGTCTGAGAGACAATTATGGAGAAAAGCCGTCTCTAGATTGGAATCGGAG 1199
Query 1197 GATAAGCATTGCACTCGGCGCAGCTCGAGGACTTGTTTACTTGCACGAGCAATGCAATCC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GATAAGCATTGCACTCGGCGCAGCTCGAGGACTTGTTTACTTGCACGAGCAATGCAATCC 1259
Query 1257 AAAGATTATTCACAGAGACGTCAAAGCTGCAAATATTCTACTTGATGAGAGTTTTGAAGC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1260 AAAGATTATTCACAGAGACGTCAAAGCTGCAAATATTCTACTTGATGAGAGCTTTGAAGC 1319
Query 1317 AATTGTTGGAGATTTTGGTCTCGCAAAGCTATTAGACCAGAGAGATTCACATGTCACAAC 1376
||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 1320 AATAGTTGGCGATTTTGGTCTAGCAAAGCTTTTAGACCAGAGAGATTCACATGTCACTAC 1379
Query 1377 CGCGGTCCGAGGAACCATTGGACACATCGCTCCTGAGTACCTTTCCACTGGACAGTCCTC 1436
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1380 CGCAGTCCGAGGAACCATTGGACACATCGCTCCCGAGTACCTTTCCACTGGACAGTCCTC 1439
Query 1437 AGAGAAAACTGATGTTTTCGGATTCGGAGTACTAATTCTTGAACTCATAACAGGTCATAA 1496
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1440 AGAGAAAACCGATGTTTTCGGATTCGGAGTACTAATCCTTGAACTCATAACAGGTCATAA 1499
Query 1497 GGTGATTGATCAAGGCAATGGTCAAGTTCGAAAAGGAATGATTTTGAGCTGGGTAAGGAC 1556
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1500 GATGATTGATCAAGGCAATGGTCAAGTTCGAAAAGGAATGATATTGAGCTGGGTAAGGAC 1559
Query 1557 ATTGAAAGCAGAGAAGAGATTTGCAGAGATGGTGGACAGAGATTTGAAAGGAGAGTTTGA 1616
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1560 ATTGAAAGCAGAGAAGAGATTTGCAGAGATGGTGGACAGAGATTTGAAGGGAGAGTTTGA 1619
Query 1617 TGATTTGGTTTTGGAGGAAGTTGTGGAATTGGCTCTGCTTTGTACACAACCACATCCGAA 1676
||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 1620 TGATTTGGTGTTGGAGGAAGTAGTGGAATTGGCTTTGCTTTGTACACAGCCACATCCGAA 1679
Query 1677 TCTAAGACCGAGGATGTCTCAGGTCTTGAAGGTACTAGAAGGTTTAGTGGAACAGTGTGA 1736
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1680 TCTAAGACCGAGGATGTCTCAAGTGTTGAAGGTACTAGAAGGTTTAGTGGAACAGTGTGA 1739
Query 1737 AGGAGGGTATGAAGCTAGAGCTCCAAGTGTCTCTAGGAATTATAGTAATGGTCATGAAGA 1796
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1740 AGGAGGGTATGAAGCTAGAGCTCCAAGTGTCTCTAGGAACTACAGTAATGGTCATGAAGA 1799
Query 1797 GCATTCGTTTATTGTTGAAGCTATTGAGCTCTCTGGACCACGATGA 1842
||| || |||||| ||||||| ||||||||||||||||||||||||
Sbjct 1800 GCAGTCCTTTATTATTGAAGCCATTGAGCTCTCTGGACCACGATGA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91164189720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5