BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330841
Length=2913
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45720.1 | Symbols: | AAA-type ATPase family protein | chr5... 4250 0.0
AT4G18820.1 | Symbols: | AAA-type ATPase family protein | chr4... 150 6e-35
> AT5G45720.1 | Symbols: | AAA-type ATPase family protein | chr5:18543193-18547129
REVERSE LENGTH=3546
Length=3546
Score = 4250 bits (2301), Expect = 0.0
Identities = 2732/2934 (93%), Gaps = 54/2934 (2%)
Strand=Plus/Plus
Query 1 ATGAGTAGGGTTGCTTCTTCTCGGA-TTCTGAAAGATTCAAATGGAGACATCGGTGAGCA 59
|||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 501 ATGAGTAGGGTTGCTTCTTCTC-GAGTTCTCAAAGATTCAAATGGAGACATCGGTGAGCA 559
Query 60 TCTTCGTAACCATATTCATTTAACCAACTGTATTCACTTGAAGAATCATATG--C-ACAA 116
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||
Sbjct 560 TCTTCGTAACCATATTCACTTAACCAACTGTATTCATTTGAAGAATCATATGCACAACAA 619
Query 117 CAACAAACAGAGTCCGGTTTTAAAC-GACCGGTCTCTTCTTATGAGAGATCTTGTCGTTC 175
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 620 CAACAAACAGAGTCCGGTTTT-AACTGACCGGTCTCTTCTTATGAGAGATCTTGTCGTTC 678
Query 176 TCCAGAGATCAACATCACTTCGTGACCCATCAGCGAGCCCGAAGTTGAGAGAAGATCATA 235
| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 679 TTCAGAGATCAAGATCACTTCGTGACCCATCAGCGAGCCCGAATTTGAAAGAAGATCATC 738
Query 236 AGGATTCACGTGAGGGAAGAAGAAGATCTGGTCTTAGGTTGTCTGGTTCTTCTCCAATTG 295
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGGACTCACGTGAGGGAAGAAGAAGATCTGGTCTTAGGTTGTCTGGTTCTTCTCCAATTG 798
Query 296 TGAGTTTTGGGACATCTAAAGTAACTCCTTCTGATGAAAAGTTTGATAGGTCGAGTAGGA 355
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 799 TGAGTTTTGGAACATCTAAAGTTACTCCTTCTGATGAAAAGTTTGATAGGTCGAGTAGGA 858
Query 356 AGAGTTATGGAGTAGAAGATGTGAATGAGTTTTATAGTGTTGCTTCGGTGAAATCGGTAT 415
|||||||| |||||||||| || |||||| ||||||||||| |||| ||||| |||||||
Sbjct 859 AGAGTTATAGAGTAGAAGAAGTTAATGAGGTTTATAGTGTTCCTTCCGTGAAGTCGGTAT 918
Query 416 CGAAAGATAGGGTTAAT---AAGGTTAATGAGGGTATTTTCAAGACT-TTGTCTGATCAG 471
||||||||||| ||||| ||||||||||||| |||| |||||||| || |||||||||
Sbjct 919 CGAAAGATAGGATTAATAAGAAGGTTAATGAGGCTATTGTCAAGACTCTT-TCTGATCAG 977
Query 472 TTAAATGAGGTTGGAGGTGATAGTGATGATTTAGTTTCTTGTAATGTTGGACCGCGCTGT 531
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 978 TTAAATGAGGTTGGTGGTGATAGTGATGATTTAGTTTCTTGTAATGTTAGACCGCGCGGT 1037
Query 532 AATGGGCGAAAAAGACGGAAGTTTAGAGGGACGAGGAGAGCGGGACGGGCGGTTATTGTT 591
||||| | | ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1038 GATGGGTGTAGAAGACGGAAGTTTAGAGGGACGAGGAGAGCGGGACGGGCCGTTAATGTT 1097
Query 592 AGAGATAATG-T--TGGTAATGAGAGTGAGATGTCTATTGCTTCAAACTCGGTGCCTCGT 648
||||| |||| | |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1098 AGAGACAATGCTGCTGGTAATGAGAGTGAGATGTCTATTGCTTCTAACTCAGTGCCTCGT 1157
Query 649 GGTGAGAAGTATGAGGGAGAAGAAGGAGGAGGAAGAGATAGAGA-ACAGAACATGAGTGG 707
|||||||||||||||||||||||||||||||| || || ||||| | |||||| ||
Sbjct 1158 GGTGAGAAGTATGAGGGAGAAGAAGGAGGAGG-AG-GA-AGAGATAGAGAACA-GA---- 1209
Query 708 AGCTGTTCCGAGAAACGGTTGTGGAATACCGTTTAATTGGTCAAGAATTCATCATAGAGG 767
| | | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 A-C--AT----G--A--GTTGTGGAATACCGTTTAATTGGTCAAGAATTCATCATAGAGG 1258
Query 768 TAAAACTTTTCTTGATATAGCTGGTAGGAGTTTATCTTGTGGAATGTCTGATTCAAAGGG 827
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1259 CAAAACTTTTCTTGATATAGCTGGTAGGAGTTTATCTTGTGGAATATCTGATTCAAAGGG 1318
Query 828 AAGGAAAGGCGAA-CTTGGTATGCCAATGTTGTCTGATTCAAGCTCCTCTGATCGCGAGG 886
||||||||||||| | ||||| ||| ||||| |||||||||||||| |||||||||||||
Sbjct 1319 AAGGAAAGGCGAAGC-TGGTACGCCGATGTTTTCTGATTCAAGCTCTTCTGATCGCGAGG 1377
Query 887 CGTCACCTCTTTTAGTCGATAGCGCAGAGAATGAAGAATGGGTGCATGATTACTCGGGTG 946
||| |||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1378 CGTTACCTCTTTTAGTCGATAGCGCAGACAATGAAGAATGGGTGCATGATTACTCAGGCG 1437
Query 947 AATTGGGTATCTTCGCCGACAATTTGCTCAAGAATGGAAAAGATTCAGGCTTTGGTAAGG 1006
| |||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1438 AGTTGGGTATATTCGCTGACAATTTGCTCAAGAATGGAAAAGATTCAGTCATTGGTAAGA 1497
Query 1007 AGAGCAGCCGTAAAAATGCTCGGTGGCATCAAAGTTTTACGCAGAAGTACGCTCCAAGAA 1066
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGAGTAGCCGTAAAAATACTCGGTGGCATCAAAGTTTTACGCAGAAGTACGCTCCAAGAA 1557
Query 1067 CATTCCGGGATCTTTTGGGACAGAACCTGGTTGTACAAGCTCTATCTAACGCTGTTGCTA 1126
||||||||||||||||||||||||| || || || || ||||| ||||||||| | ||||
Sbjct 1558 CATTCCGGGATCTTTTGGGACAGAATCTTGTGGTGCAGGCTCTGTCTAACGCTATAGCTA 1617
Query 1127 AACGAAGAGTTGGACTTCTTTACGTATTCCATGGTCCAAATGGAACCGGAAAAACATCTT 1186
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1618 AACGAAGAGTTGGACTTCTTTACGTATTCCACGGTCCAAATGGAACCGGAAAAACATCTT 1677
Query 1187 GTGCTCGGATATTTGCTAGAGCTTTGAACTGCCATTCGACAGAACAATCAAAGCCTTGTG 1246
|||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1678 GTGCTCGGGTATTTGCTAGAGCTTTGAACTGCCATTCTACGGAACAATCAAAGCCTTGCG 1737
Query 1247 GCGTATGCGGTTCGTGTGTTTCTTATGATGGTGGTAAGAACCGGTACATTCGGGAAATGG 1306
| |||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1738 GTGTATGCAGTTCTTGTGTTTCTTATGATGATGGTAAGAACCGGTACATTCGAGAAATGG 1797
Query 1307 GACCTGTAAAAAGTTTCGACTTCGAGAATTTGCTCGATAAAATGAACATTCGTCAGCAGC 1366
| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1798 GTCCTGTAAAAAGTTTCGACTTTGAGAATTTGCTCGATAAAACGAACATTCGTCAGCAGC 1857
Query 1367 AAAGGCAGCAGCTTGTGTTCATATTCGATGATTGCGATACTATGTCAACAGATTGTTGGA 1426
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 AAAAGCAGCAGCTTGTGTTAATATTCGATGATTGCGATACTATGTCAACAGATTGTTGGA 1917
Query 1427 ATGCGCTTTCGAAAATAGTGGATCGAGCACCTCGTCGTGTGGTTTTCATTCTTGTATGTT 1486
|| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1918 ATACGCTATCGAAAATAGTGGACCGAGCACCTCGTCGTGTGGTTTTCGTTCTTGTATGTT 1977
Query 1487 CGAGTCTTGATGTTTTGCCTCACATTATTGTTTCGAGGTGCCAGAAATTCTTTTTCCCTA 1546
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1978 CGAGTCTTGATGTTTTGCCTCACATTATCGTTTCGAGGTGCCAGAAATTCTTTTTCCCTA 2037
Query 1547 AGCTCAAAGACGCAGATATCATCGATTCTTTGCAACTTATTGCATCAAAAGAAGAGATTG 1606
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AGCTCAAAGACGTAGATATCATCGATTCTTTGCAACTTATTGCATCAAAAGAAGAGATTG 2097
Query 1607 ATATCGAAAAAGATGCGTTAAAGCTTGTTGCTTCGAGATCTGATGGTTCCTTGAGAGACG 1666
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 2098 ATATCGATAAAGATGCGTTGAAGCTTGTTGCTTCGAGATCAGATGGTTCCTTGAGAGACG 2157
Query 1667 CGGAAATGACTCTAGAACAGCTGAGTTTGCTTGGCACAAGAGTATCTGTTCCTTTAGTTC 1726
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 2158 CGGAAATGACTCTAGAACAGCTGAGTTTGCTTGGAACAAGAATCTCTGTTCCTTTAGTTC 2217
Query 1727 AAGAAATGGTTGGGTTAATATCTGATGAGAAATTAGTTGATCTTCTTGATCTAGCCTTAT 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 AAGAAATGGTTGGGTTAATATCTGATGAGAAATTAGTTGATCTTCTTGATCTAGCCTTAT 2277
Query 1787 CCGCGGATACTGTAAACACCGTAAAGAACCTAAGAATAATAATGGAAACCGGCCTAGAAC 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 CCGCGGATACTGTAAACACCGTAAAGAACCTAAGAATAATAATGGAAACCGGCCTAGAAC 2337
Query 1847 CATTAGCTTTGATGTCACAGCTGGCAACCGTCATAACTGATATCCTCGCGGGAAGCTATG 1906
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 2338 CATTAGCTTTGATGTCACAGCTCGCAACCGTCATAACCGATATCCTCGCGGGAAGCTATG 2397
Query 1907 ATTTCACTAAAGACCAATGTAAAAGAAAGTTTTTCCGGCGACAACCACTGTCTAAAGAAG 1966
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 ACTTCACTAAAGATCAATGTAAAAGAAAGTTTTTCCGGCGACAACCACTGTCTAAAGAAG 2457
Query 1967 ATATGGAGAAGCTGAAGCAAGCTTTAAAAACACTATCTGAATCAGAAAAACAGTTGAGAG 2026
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2458 ATATGGAGAAGCTGAAACAAGCTTTGAAAACACTATCTGAATCAGAAAAACAGTTGAGAG 2517
Query 2027 TATCGAGCGATAAACTAACTTGGCTCACTGCTGCATTGCTCCAGCTAGCTCCTGATAAAC 2086
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2518 TATCGAACGATAAACTAACTTGGCTCACTGCTGCATTGCTACAGCTAGCTCCTGATAAAC 2577
Query 2087 AGTACTTGCTTCCACATAGTTCTTCCGCTGATGCTAGCTTTAGCCATACTCCAATAATGG 2146
||||||||||||| ||||||||||| |||||||||||||||| |||||||||| | | ||
Sbjct 2578 AGTACTTGCTTCCGCATAGTTCTTCTGCTGATGCTAGCTTTAACCATACTCCATTGACGG 2637
Query 2147 ATTCGGATCCTTCAAATGACGCTGTAGCCGGAACAAGAAGAGATGGTAGTATGCAAGGTT 2206
||||||||||||| || | | ||||||||||||||||||||||| ||||| ||||||||
Sbjct 2638 ATTCGGATCCTTCGAACCATGTTGTAGCCGGAACAAGAAGAGATGATAGTAAGCAAGGTT 2697
Query 2207 TCAGTTGCAAAAACCGACCTTCGGTTGAAGATATTTGGTTAGCGGTTATTGAGAAAGTTC 2266
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 2698 TCAGCTGCAAAAACCGACCTTCCGTTGAAGATATTTGGTTAGCGGTTATCGAGAATGTTC 2757
Query 2267 GAGTTAACGGTTTAAAAGAGTTTCTTTATAAAGAAGGGAGGATCTTTTCGATTAGTATCG 2326
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2758 GAGTTAACGGCTTACGAGAGTTTCTTTATAAAGAAGGGAAGATCTTTTCGATTAGTATCG 2817
Query 2327 GCTCAGCTCCTACGGTGCAGCTATTGTTCAATTCGCCAATAGCGAAATCAACGGCTGAGA 2386
|||||||||||| ||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 2818 GCTCAGCTCCTATGGTGCAGTTAATGTTTAATTCGCCAATAGCGAAATCAACGGCTGAGA 2877
Query 2387 ATTTCAAAGACCACATTTTGAAAGCGTTTGAGGCGGTTCTTGGATCTCCAGTCACGTTGG 2446
||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2878 ATTTCGAAGAACACATTTTGAAAGCGTTTGAGGCTGTTCTTGGATCTCCAGTCACGTTAG 2937
Query 2447 AGTTCAGAATCGAGTCAAAGAAACAACCGAAAAACGTCGATTTATCGCCATTACAAGGTT 2506
|| | |||| |||||| |||||| | || || | ||| ||| ||||||||||||
Sbjct 2938 AGATGAGAACCGAGTCGAAGAAAGA-CCT-----CG--G-TTTCTCGTCATTACAAGGTT 2988
Query 2507 TAAGCAACGGTGAGAGATTCCGTGAAAGCGGAAGAAGCGAAATCGTTGAAGTGGCTGAAT 2566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2989 TAAGCAACGGTGAGAGATTCCGTGAAAGCGGAAGAAGCGAAATCGTTGAAGTGGCTGACT 3048
Query 2567 CTGAATCTCCAATGACTCGAACTAGAAGGAAACACTTGGAAGCAAGTCAAAACCAGAA-- 2624
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 3049 CTGAATCTCCAATGACTCGAGTTAGAAGGAAACACTTGGAAGCAAGTCAAAACCAAAACC 3108
Query 2625 ----TCAGAACCAAAGCATTGTGAGAGGAAAAGTTTCTTTGGCTCAAGTGATTAAACAAG 2680
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3109 AAAATCAGAACCAGAGCATTGTGAGAGGAAAAGTTTCGTTGGCTCAAGTGATTAAACAAG 3168
Query 2681 CTGAAGGAAACAGTTGGTCGAAACACAAAGCTGTGGAGATTGCAAATAAGCTTGAACAAG 2740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3169 CTGAAGGAAACAGTTGGTCGAAACACAAAGCTGTGGAGATTGCAAATAAGCTTGAACAAG 3228
Query 2741 AGAATTTGAAACTTGAACCAAGATCAAGAAGCTTGATATGTTGGAAACCATCAAGAACCA 2800
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 3229 AGAATTTGAAACTTGAACCAAGATCAAGAAGCTTGATATGTTGGAAAGCATCAAGAAGCA 3288
Query 2801 CTCGTCGCAAGCTATCGAGATTGAAGGTGAGAACAAG-AAGGATACGATTACACTCGTTG 2859
||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct 3289 CTCGTCGCAAGCTATCGAGATTGAAGGTGAGAACAAGGAAGT-TACGATTACATTCGTTG 3347
Query 2860 TTGAAGTTTCTCTCTTGTGGGAAATGTCTATCAACTAGATCTTCTCCTAGCTAG 2913
|||||| || ||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 3348 TTGAAGCTTGTCTCTTGTGGGAAATGTCTATCAACGAGATCTCCTCCTAGATAG 3401
> AT4G18820.1 | Symbols: | AAA-type ATPase family protein | chr4:10330371-10334268
FORWARD LENGTH=3472
Length=3472
Score = 150 bits (81), Expect = 6e-35
Identities = 236/305 (77%), Gaps = 34/305 (11%)
Strand=Plus/Plus
Query 541 AAAAGACGGAAGTTTAGAGGGACGAGGAGAGCGGGACGGGCGGTTATTGTTAGAGATAAT 600
||||||||||||||||||||||||||||||| |||| | | | || ||||||| |
Sbjct 739 AAAAGACGGAAGTTTAGAGGGACGAGGAGAGTT---CGGG-G-TAAGAGT-AGAGATACT 792
Query 601 GTTGGTAATGAGAGTGAGATGTCTATTGCTTCAAACTCGGTGCCTCGTGGTGAGAAGTAT 660
| |||| | |||||||||||||| ||||||| ||| | |||||| | ||||||| ||
Sbjct 793 GGTGGTGGTAAGAGTGAGATGTCTGTTGCTTCTAACACATTGCCTCAAGTTGAGAAGCAT 852
Query 661 GAGGGAGAAGAAGGAGGAGGAAGAGATAGAGAACAGAACATGAGTGGAGCTGTTCCGAGA 720
|| |||||| || || ||| || | | ||||||||||||| | | |
Sbjct 853 GATGGAGAA-AA--AG-AGG--GATTTGGGGAACAGAACATGA------C-------A-A 892
Query 721 AACGG-TTGTGGAATACCGTTTAATTGGTCAAGAATTCATCATAGAGGTAAAACTTTTCT 779
| || |||||| || || ||||||||||||||||||||||| |||| |||||||||||
Sbjct 893 A--GGCTTGTGGGATTCCATTTAATTGGTCAAGAATTCATCACCGAGGGAAAACTTTTCT 950
Query 780 TGATATAG-CTGGTAGGAGTTTATCTTGTGGAATGTCTGATTC-AAAGG-GA-AGGAAAG 835
||||| || | ||||||||||| |||||||| ||||||||||| ||||| | |||||||
Sbjct 951 TGATA-AGGCGGGTAGGAGTTTGTCTTGTGGTATGTCTGATTCGAAAGGTGGTAGGAAAG 1009
Query 836 GCGAA 840
| |||
Sbjct 1010 GTGAA 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144781797498
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5