BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330871
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45310.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 1530 0.0
> AT5G45310.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: stem, inflorescence meristem, root,
leaf; EXPRESSED DURING: LP.04 four leaves visible; Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr5:18359275-18361114 REVERSE LENGTH=1289
Length=1289
Score = 1530 bits (828), Expect = 0.0
Identities = 988/1065 (93%), Gaps = 12/1065 (1%)
Strand=Plus/Plus
Query 1 ATGGATCTTGGAGGTTTGATTTCTGGCTTGGTCTCATCTTCAGTT-TATCTTATGACCAG 59
|||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||
Sbjct 133 ATGGATCTTGGAGGTTTGATTTCTGGGTTGGTCTCATCTTCA-TTATATCTTATGACCAG 191
Query 60 ACCTTTCTTTTTCTGCATAT-CTGCATGTGTGTTCTGTCTTAGAACAGCTCTTGTCACAA 118
|||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 192 ACCTTTCTTTTTCTGCATATAC-GCATGTGTGTTCTGTCTTAGAACAGCTCTTGTTACAA 250
Query 119 CCTTTGTGTCTACTGATATGGTGACTTCTGCAATTTGGTTCAACTTAAGTATGCTCTGGA 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 251 CCTTTGTATCTACTGATATGGTGACTTCTGCAATTTGGTTCAACTTAAGTATGCTGTGGA 310
Query 179 GAGCTGTGTGGGGATCAATCTGGGGATCGGTTCTTCTTTTTACGTTCCCGATTCGCTTTT 238
||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 311 GAGCTGTACGGGGCTCTATCTGGGGATCCGTTCTTCTTTTTACGTTCCCGATTCGCTTTT 370
Query 239 TCGTCTCTATACCAAGGGAAAGACTGCTTGAGCAGAGTATTTATGAGTTGCGGTATGAGG 298
||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 371 TCGCCTCTATACCAAGGGAAAGACTGCTTGAGCAGAGTATTTATGATTTGAGGTATGAGC 430
Query 299 TAGAGAGTCTTGAAAGGAATAGAAAAGAGATAGAGGAGAATCTCCGGGCAGCAATAAAAG 358
|||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 431 TAGAGAGTCTTGAATGGAATAGAAAAGAGATAGAGAAGAATCTCCGGGAAGCAATAAAAG 490
Query 359 AATACCGAATCATGGAAC-GCGACTTAGATGAACTAGAAGATGAACATGATGAAGCTATT 417
|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 491 AATATCGAATCATGGAACAG-GACTTAGATGAACTAGAAGATGAACATGATGAAGCCATT 549
Query 418 TCCAAAATAGAAAAGCTAGAGGCTGAGCTGCAAGAACTAAAAGAGGAAAATCTTCAGTTG 477
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 550 TCCAAAATAGAAAAGCTAGAGGCCGAGCTACAAGAACTAAAGGAGGAAAATCTTCAACTG 609
Query 478 AAGGAAGTTAATAGAAAAGACTATTGGAGCAAGAAAGACAAAGTTATAACC-AGTGAAGA 536
| |||||||||| ||||||||||| |||||||||| | |||||||| |||| ||||||||
Sbjct 610 ATGGAAGTTAATGGAAAAGACTATAGGAGCAAGAAGGGCAAAGTTA-AACCAAGTGAAGA 668
Query 537 ACCAAGCGAAATCCGTAGCATACCGAAGCCGAAGAATATCCCTTGTGAATCAAAGGGAAA 596
||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||
Sbjct 669 ACCAAGCGAAATCCGTAGCATACATAAGCCTAAGAATATCCCTTATGCATCAAAGGGAAA 728
Query 597 TGCAGAGTTCACATCGGTTAAATCACCTCTTTATCCGTTTGCAAAATCGACAATCCCAAA 656
|| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 729 AGCCGAGTTTACATCGGTTAAATCACCTCTTTACCCGTTTGCGAAATCGACAATTCCAAA 788
Query 657 AGACGAAGAATTGACACCAAGAGTCCTCGATTTAGAGAGGAAAATTGCGGTTTCAAGAAG 716
||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 789 AGACGAAGAATTGACGCCAAGAGTCCTCGGTTTAGAGAAGAACATTGCGGTTTCAAGAAG 848
Query 717 TGTATTCAGCGCGATGCTCGCTCTAGTGGTGGGTATAGTAATGTATGAAGCCAAAGAACA 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CGTATTCAGCGCGATGCTCGCTCTAGTGGTGGGTATAGTAATGTATGAAGCCAAAGAACA 908
Query 777 AGAGCTGTGCACTCCACTTTTAGGAGCACTCTTCACTGTGGTTGGTATCTCTCT-AAGAA 835
||||||||| ||||||||| |||||||||||||||| ||||||||||||||| | || ||
Sbjct 909 AGAGCTGTGTACTCCACTTATAGGAGCACTCTTCACAGTGGTTGGTATCTCTTTGAA-AA 967
Query 836 GTGTGGTTCAATTTTTCTCTACGGTTAAGAATAAACCGGCTTTAGATGCAGTTGCTCTCA 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 968 GTGTGGTTCAATTTTTCTCTACGGTTAAGAATAAACCGGCTTTAGATGCAGTTGCTCTTA 1027
Query 896 TGAGTCTCAATTGGTTTATCGTCGGTACTCTTACCTACCCGACTCTACCAAGAGTTGCTC 955
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1028 TGAGTCTCAACTGGTTTATCGTTGGTACTCTTACTTACCCGACTCTACCAAGAGTTGCTC 1087
Query 956 GAATTGTGGTCCCGCGAGTCGTTAGCACTGTTGGCTCGGTCTTCGCTTTGCTCCATGGTG 1015
||||||||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||
Sbjct 1088 GAATTGTGGTCCCACGAGTCTTTAACACCGTCGGCTCGGTCTTCGCTTTGCTCCATGGTG 1147
Query 1016 GCTCAGTCCC-TGCGTCACTGGAGCTTGTTAACTATGCTAGTTAA 1059
||||| |||| | || ||| ||| |||| ||||||| | |||||
Sbjct 1148 GCTCACTCCCCT-CGCCACCAGAGTTTGTGAACTATGTTGGTTAA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5