BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330877
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02340.1 | Symbols: AtPP2-B8, PP2-B8 | phloem protein 2-B8 |... 414 6e-115
AT2G02350.1 | Symbols: SKIP3, AtPP2-B9 | SKP1 interacting partn... 403 1e-111
AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2 |... 344 7e-94
AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:5923... 327 7e-89
> AT2G02340.1 | Symbols: AtPP2-B8, PP2-B8 | phloem protein 2-B8
| chr2:616088-617274 REVERSE LENGTH=918
Length=918
Score = 414 bits (224), Expect = 6e-115
Identities = 629/813 (77%), Gaps = 73/813 (9%)
Strand=Plus/Plus
Query 54 CTTGCCGGAGGACTGCATCTCCAA-CATAATCTCTTTCACCAGTCCTCTAGACGCGTGCG 112
||| ||||| || || ||| ||| |||| |||||||||| || |||| ||| |||||||
Sbjct 114 CTTACCGGAAGAATGTGTCT-CAATCATAGTCTCTTTCACAAGCCCTCAAGATGCGTGCG 172
Query 113 TAGTCGCTTCGGTTTCG-AGACTCTTCGAAGCGGCGGCCAAGTCAGATACCGTATGGGAG 171
| | |||||||||||| | || ||| | |||||| ||||||||||| |||||||||
Sbjct 173 TCCTTGCTTCGGTTTCGAAAAC-CTTTGCTTCGGCGGTCAAGTCAGATATTGTATGGGAG 231
Query 172 AAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCTGGATCGCGGGATTTC----TC--A 225
|| ||| ||||||| || | ||||||| || || || ||| || | |||| || |
Sbjct 232 AAGTTTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGCTTTCAAATTCTTA 291
Query 226 TTGAAGAAGGAGCTCTATTTCGCTCTTTGCGGCGA-TCCGGTTCTAATCGATAATGG-AA 283
| ||||||||||||||||||||||||||||| | | || | ||||||| || |||| ||
Sbjct 292 TCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACAAATCTG-TTCTAATTGACGATGGCAA 350
Query 284 AAATGAGCTTCTGGTTAGATAAAGCGAATGGGAAGA-AGTGTATCATGTTATTAGCGGAT 342
||| |||||| ||| |||| |||||||| | ||||| | ||||||||| ||| |||| ||
Sbjct 351 AAA-GAGCTTATGGATAGAAAAAGCGAACGCGAAGAGA-TGTATCATGATATCAGCG-AT 407
Query 343 -AACCTCAGTA-TCATATGGGGAGAAAATAT--TGACCA-TTGGC-ATTGGATTCGA-AT 395
||||| | | || ||||| ||| | | | | | ||||| || |||||| | ||
Sbjct 408 GAACCTT-GCAATCGCGTGGGG-GAAT-TCTCCTCAG-AGTTGGCGAT-GGATTCCAGAT 462
Query 396 ACCTGAAGCTAGGTTTGGAAA-AGTAGCGGAGCTTGTC-AGCGTATGTTGGTTCAAGATT 453
||| |||||||||||| ||| |||||||||||| | | ||||||| ||| |||||
Sbjct 463 -CCTCAAGCTAGGTTTG-AAACAGTAGCGGAGCTACTTGAA-GTATGTTTGTTTGAGATT 519
Query 454 TGTGGCAGAGTGAATACTTGTGTCCTATCTCCAGAAACTCGTTACTCGGCTTACATTGTG 513
|||||||| | |||| | |||| |||||||| ||||||||||||||||||||||||||
Sbjct 520 CGTGGCAGAATAAATAGTCGTGTGATATCTCCAAAAACTCGTTACTCGGCTTACATTGTG 579
Query 514 TTCAAGAAA--GAGGATGACTGTTATGGCTTTGAGGATGTGGCCATAGAAGCTGCCGTTG 571
| ||||||| || || | ||||||||||||||| |||| ||| |||||| || ||||
Sbjct 580 TACAAGAAATTGAATAT-A-TGTTATGGCTTTGAGAATGTAGCCGTAGAAGTTGTAGTTG 637
Query 572 GAGTGGTGGGACA---T---GAAC---CTTCTAGAAGAT-TCATATGCTTTGATGAG-C- 619
|||||||||| || | ||| ||| | |||||| | ||||||||||||||| |
Sbjct 638 GAGTGGTGGGGCAGGATTTAGAAGAATCTTGTCGAAGATAT-ATATGCTTTGATGAGACT 696
Query 620 A-GTTT------TTTAGGAG-AGAGA-AGGG-AATTAGTAACCTAGTGAAACCAGAGAAG 669
| | | ||| | || ||||| |||| || || |||||||| |||||||||| |
Sbjct 697 ATGGATGAGCAGTTTCGAAGGAGAGATAGGGGAA--AG-AACCTAGTAAAACCAGAGAGG 753
Query 670 AGACGAGATGGATGGATGGAGATTGAGCTTGGGGAATTCTTCACTGAAGGAGAA--AT-G 726
||| |||||| ||||||||||| || ||||||||||||||| |||||||| | || |
Sbjct 754 AGAAAAGATGGGTGGATGGAGATAAAGATTGGGGAATTCTTCAATGAAGGAGGATTATTG 813
Query 727 TAT-AGTGATGAAATTGAGATAAGT-GCTCTAGAGACTAAGTTGC-TCAATTGGAAGCGC 783
| | ||||||||||||||| || ||| ||||| ||||| || ||| |||||| ||
Sbjct 814 AACGA-TGATGAAATTGAGATG-GTTGCTTTAGAGGCTAAGCAGCGTCA-TTGGAAACGT 870
Query 784 GGCTTGATCATTCTAGGAATTGAAATCCGTCCT 816
||||||||||||| |||||||||||||||||||
Sbjct 871 GGCTTGATCATTCAAGGAATTGAAATCCGTCCT 903
> AT2G02350.1 | Symbols: SKIP3, AtPP2-B9 | SKP1 interacting partner
3 | chr2:617800-619091 REVERSE LENGTH=1030
Length=1030
Score = 403 bits (218), Expect = 1e-111
Identities = 625/812 (77%), Gaps = 66/812 (8%)
Strand=Plus/Plus
Query 50 ATTCCTTGCCGGA-GGACTGCATCTCCAACATAATCTCTTTCACCAGTCCTCTAGACGCG 108
|||| ||||| || ||| ||||| || ||||||||||||||||| |||||| ||||||
Sbjct 47 ATTCGTTGCCTGAGGGA-TGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCT 105
Query 109 TGCGTAGTC-GCTTCGGTTTCG-AGACTCTTCGAAGCGGCGGCCAAGTCAGATACCGTAT 166
||||| | | ||| |||||||| ||| |||||||| |||||| || ||||||| |||||
Sbjct 106 TGCGTCG-CTGCTGCGGTTTCGAAGA-TCTTCGAATCGGCGGTGAAATCAGATATCGTAT 163
Query 167 GGGAGAAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCT-GGATCGCGGGATTTCTCA 225
||||||| ||||||||| |||||| ||||||||| || || | ||||| | |||||||
Sbjct 164 GGGAGAAGTTTCTTCCGACGGATTACGAATCTCTGATTACTCCG-TCGCGAGTTTTCTCA 222
Query 226 TTGAAGAAGGAGCTCTATTTCGCTCTTTGCGGCGATCCGGTTCTAATCGATA-ATGGAAA 284
| ||||||||| ||||||||| |||| ||| |||||| |||||||||| | |||| ||
Sbjct 223 TCGAAGAAGGAACTCTATTTCTCTCTCTGCAACGATCCTCTTCTAATCGA-AGATGGCAA 281
Query 285 AATGAGCTTCTGGTTAGATAAAGCGAATGGGAAGAAG-TGTATCATGTTAT-T--AGC-G 339
||||||||| |||||||| ||||||| ||||||| || || || ||||||| | | | |
Sbjct 282 AATGAGCTTATGGTTAGAGAAAGCGAGTGGGAAG-AGATGCATAATGTTATCTGCAACTG 340
Query 340 -GAT-AACCTCAGTATC-A-TATGGGGAGAAAATAT-TGACCATTGGCAT-TGGATTCGA 393
||| || || |||| | || || || | || | | | | || | | |||||||
Sbjct 341 CGATGAA--TC--TATCAAGCAT-GGCAG-ATATGTCTCAGCGTT-TCCTATGGATTC-C 392
Query 394 AT-ACCTGAAGCTAGGTTTGGAAA-AGTAGCGGAGCTT-GTCAG-CGTATGTTGGTTCAA 449
|| || ||| |||||||| |||| |||||||| |||| | | | | || | |||| |
Sbjct 393 ATGTCCAGAATCTAGGTTT-GAAACAGTAGCGGCGCTTCG-C-GAAGCATATAGGTTTGA 449
Query 450 GATTT-GTGGCAGAGTGAATACTTGTGTCCTATCTC-CAGAAACTCGTTACTCGGCT-TA 506
| ||| | ||||| |||||||| ||||||| |||| || |||||||||||||| | ||
Sbjct 450 G-TTTAATTGCAGAATGAATACTCGTGTCCTTTCTCTAAG-AACTCGTTACTCGG-TCTA 506
Query 507 CATTGTGTTCAAGAAAGAGGATGACTGTTATGGCTTTGAGGATGTGGCCATAGAAGCTGC 566
||||||||||||||||| |||| | || | ||||||| ||| |||| | ||||| ||||
Sbjct 507 CATTGTGTTCAAGAAAGCGGATAATTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGT 566
Query 567 CGTT-GGAGTGGTGGGACATGAACCTTCTAGAAGATTCATATGCTTTGATGA-GCAGTTT 624
||| ||| | |||||| | || ||| |||||| ||||||||||||||| | ||| |
Sbjct 567 AGTTGGGA-TAGTGGGAGAGGAGTCTTTTAGAAGTTTCATATGCTTTGAT-ACGCA--TG 622
Query 625 TTTAGGAGAG-AGAAGGGAATTAGTAACCTAGT---GAAACCAGAGAAGAGACG-AGATG 679
||| | | || ||| || || | || |||||||||| |||| | |||||
Sbjct 623 GGAAGG-G-GCAGGCTCGAAAGAGGAAAGTGGTGGCGAAACCAGAGTTGAGA-GAAGATG 679
Query 680 GATGGATGGAGATTGAGCTTGGGGAATTCT-TCACTGAAGGA-GA--AATGTA-TAGTGA 734
| |||||||||| ||| |||||||||||| | | ||||||| || |||| | ||||||
Sbjct 680 GGTGGATGGAGACAGAGATTGGGGAATTCTAT-AATGAAGGAGGATTAATG-AGTAGTGA 737
Query 735 TGAAATTGAGATAAGTGCTCTAGAGACTAAGT-TGCTCAATTGGAAGCGCGGCTTGATCA 793
||| ||||||||||| || ||||| ||| | || | | |||||| || ||| |||
Sbjct 738 TGAGGTTGAGATAAGTACTGTAGAGGGTAAATACGC-CCAGCAGAAGCGTGGTTTGGTCA 796
Query 794 TTCTAGGAATTGAAATCCGTCCTGCAAAAATC 825
||||||||||||||||||||||||| ||||||
Sbjct 797 TTCTAGGAATTGAAATCCGTCCTGCGAAAATC 828
> AT2G02250.1 | Symbols: AtPP2-B2, PP2-B2 | phloem protein 2-B2
| chr2:594655-595852 REVERSE LENGTH=960
Length=960
Score = 344 bits (186), Expect = 7e-94
Identities = 601/793 (76%), Gaps = 62/793 (8%)
Strand=Plus/Plus
Query 54 CTTGCCGGAGGACTGCATCTCCAACATAATCTCTTTCACCAGTCCTC-TAGACGCGTGCG 112
||| |||||||| |||||||||||||| ||||||||||| ||||||| | ||||| ||||
Sbjct 174 CTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTCCTCGT-GACGCTTGCG 232
Query 113 TAGTC-GCTTCGGTTTCG-AGACTCTTCGAAGCGGCGGCCAAGTCAGATACCGTATGGGA 170
| | | |||||||||||| | || ||| ||| |||| | || || |||| |||||||||
Sbjct 233 TTG-CAGCTTCGGTTTCGAAAAC-CTTTGAATCGGCTGTTAATTCCGATAGCGTATGGGA 290
Query 171 GAAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCTGGATCGCGGGATTTCTCATTGAA 230
|| |||||||| |||||| | |||||| |||||| ||| || | |||||||| |||
Sbjct 291 CAAGTTTCTTCCATCGGATTATTCATCTCTAGTTCCTCCATCTCGAGTTTTCTCATCGAA 350
Query 231 GAAGGAGCTCTATTTCGCTCTTTGCGGCGATCCGGTTCTAATCGATA-ATGG-AAAAATG 288
||||||||||||||||||| | |||| | |||| |||||| |||| | |||| ||| |
Sbjct 351 GAAGGAGCTCTATTTCGCTATATGCGACAATCCTGTTCTAGTCGA-AGATGGCGGAAA-G 408
Query 289 AGCTTCTGGTTAGATAAAGCGAATGGGAAGAAGTGTATCATGTTAT-TAGCG--GATAAC 345
|||||||||||||| |||| ||||||||| |||||| ||||||||| | || || ||
Sbjct 409 AGCTTCTGGTTAGAGAAAGAGAATGGGAAAAAGTGTTTCATGTTATCT-CCGAAGA-AAT 466
Query 346 CTCA-GT--ATCATATGGG-GAGAAAATATTGACCATTGGC-ATTGGA-TTCGAATACCT 399
|| | || |||| ||||| || | | | | |||||| | |||| |||| || |||
Sbjct 467 CT-ATGTGGATCACATGGGTTAG-TACTCCTCAGTATTGGCGA-TGGATTTCG-ATTCCT 522
Query 400 GAAGCTAGGTTTGGAA-AAGTAGCGGAGCTTG-TCAGCGTATGTTGGTTCAAGATTTGTG 457
|||||||||||| ||| ||||| | |||| || ||| || |||||||| || | | |
Sbjct 523 GAAGCTAGGTTT-GAAGAAGTACCAGAGC-TGCTCAATGTGTGTTGGTTTGAGGTCCGAG 580
Query 458 GCAGAGTGAATACTTGTGTCCTATCTCCAGAAACTCGTTACTCGGCTTACATTGTGTTCA 517
| || |||||||| | |||||||| | ||| |||||||||||||||||||||||||
Sbjct 581 GGGGAATGAATACTAAAGAACTATCTCCTGGAACCCGTTACTCGGCTTACATTGTGTTCA 640
Query 518 AGA-AAGAGGATG-ACTGTTATGGCTTTGAGG-ATGTGGCCA-TAGAAGCTGCCGTTGGA 573
||| || || ||| | ||| | |||| || ||||| ||| |||||||| | ||||||
Sbjct 641 AGACAA-AGAATGGA-TGTCCTAA-TTTGGGGGATGTG-CCAGTAGAAGCTACTGTTGGA 696
Query 574 GTGGTGGGACATGAACCTTCT-AGAAGATTCATATGCTTTGATGAGCAGTTTTT-T-A-- 628
|||||||||| ||| ||||| | |||| ||||| ||||| || || || | |
Sbjct 697 TTGGTGGGACAAGAATCTTCTCA-AAGACACATATACTTTGTTGGGCC-TTCGGATCAAA 754
Query 629 GGAGAGAGAAGGGAATT-AGTA-ACCTAGTGAAACCAGAG-AAGAGACGAGATGGATGGA 685
||||||| | | ||| || | | || || |||| | || ||| |||||| ||||
Sbjct 755 GGAGAGACA-GAGAAACGAG-AGATGTAACGAGACCA-ACTAAAAGAAAAGATGGTTGGA 811
Query 686 TGGA-GATTGAGCTTGGGGAATTCTTCACTGAAGG-AGAAATGTATAGTGATGAAATTGA 743
|||| | | |||||||| ||||||||| ||| | || || | |||||| ||||
Sbjct 812 TGGAAGCT-GAGCTTGGTCAATTCTTCAATGA-GTCAG----GT-T-GTGATGTTGTTGA 863
Query 744 GATAAGTGCTCTAGAGACTAAGT-TGCTCAATTGGAAGCGCGGCTTGATCATTCTAGGAA 802
| |||| ||| |||| |||| | || | |||||||||||| |||||||||| |||||
Sbjct 864 CACAAGTATTCTTGAGATTAAGACTCCTTA-TTGGAAGCGCGGTTTGATCATTCAAGGAA 922
Query 803 TTGAAATCCGTCC 815
| ||| |||||||
Sbjct 923 TCGAATTCCGTCC 935
> AT2G02240.1 | Symbols: MEE66 | F-box family protein | chr2:592359-593602
REVERSE LENGTH=963
Length=963
Score = 327 bits (177), Expect = 7e-89
Identities = 605/802 (75%), Gaps = 67/802 (8%)
Strand=Plus/Plus
Query 54 CTTGCCGGAGGACTGCATCTCCAACATAATCTCTTTCACCAGTCCTCTAGACGCGTGCGT 113
|||||||||||| |||||||||||||||||||||||||| ||||| | ||| ||||||||
Sbjct 189 CTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGT 248
Query 114 AGTC-GCTTCGGTTT-CGAGACTCTTCGAAGCGGCGGCCAAG-TCAGATACCGTATGGGA 170
| | || ||||||| | | || ||| ||| | || | || || ||| |||||||||
Sbjct 249 TG-CTGCATCGGTTTCCAAAAC-CTTTGAATCAGCTG-TTAGTTCCGATTGCGTATGGGA 305
Query 171 GAAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCTGGATCGCGGGATTTCT-CATTGA 229
|| |||||||| ||||| | ||||||| ||||| || |||| || | ||| | ||| ||
Sbjct 306 CAAGTTTCTTCCACCGGAGTATGAATCTTTGGTTTCTCGATCTCGAG-TTTTTGCATCGA 364
Query 230 AGAAGGAGCTCTATTTCGCTCTTTGCGGCGATCCGGTTCTAATCGATA-ATGG-AAAAAT 287
||||||| || ||||||||||| ||| | |||| ||||||||||| | |||| |||||
Sbjct 365 AGAAGGAACTTTATTTCGCTCTCTGCCACAATCCTGTTCTAATCGA-AGATGGCAAAAA- 422
Query 288 GAGCTTCTGGTTAGATAAAGCGAATGGGAAGAA-GTGTATCATGTTA--TT-AGCGGATA 343
|||||| |||||||| ||||||| | |||| || ||||||||||||| || | || |
Sbjct 423 GAGCTTTTGGTTAGAAAAAGCGAGT-GGAAAAAGGTGTATCATGTTATCTTCAAAGG--A 479
Query 344 ACCTCAGTATCATATGGGG-AGAAAATATTGACCATTGGCATTGGA-TTCGAATACCTGA 401
| || | |||| |||||| || | | ||| ||||||| |||| ||| ||| |||||
Sbjct 480 A-CTTTGGATCACATGGGGAAG-TAGTCCTGAATATTGGCAATGGATTTC-AATTCCTGA 536
Query 402 AGCTAGGTTTGGA-AAAGTAGCGGAGCTT-GTCAGCGTATGTTGGTTCAAGATTTGTGGC 459
| ||| | || | ||| |||| |||||| | | || |||||||| ||||| |||||
Sbjct 537 ATCTA-GATTCAACAAAATAGCAGAGCTTCTTGA-TGTGTGTTGGTTTGAGATTCGTGGC 594
Query 460 AGAGTGAA-TACTTGTGTCCTATCTCCAGAAACTCGTTACTCGGCTTACATTGTGTTCAA 518
| || || || |||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 595 A-AGACAAGCGCTCGTGTGCTATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAA 653
Query 519 GA--AAGAGGAT-GACTGTTATGGCTTTGAGG-ATGTGGCCA-TAGAAGCTGC-CGTTGG 572
|| || || || || ||| ||| || | || || || || |||||| || | ||||
Sbjct 654 GACGAA-AG-ATCGA-TGTCCTGGATTAG-GGCATTTG-CCGGTAGAAGTTGGAC-TTGG 707
Query 573 AGTGGTGGGACATGAACCTTCTAGAAGATTCATATGCTTTGAT-GAGC--AGTTTTTTA- 628
| |||||||| ||| |||||| ||||||||||| ||| || | || || | |
Sbjct 708 TTTAGTGGGACAAGAATCTTCTAAAAGATTCATATA-TTTCATAGGGCCTAGGGATCGAA 766
Query 629 GGAGAGAGAAGGGAATT-AGTA-ACCTAGTGAAACCAGAG-AAGAGACGA-GATGGATGG 684
|| || || |||||| || | | || |||||||| || ||| || ||||| |||
Sbjct 767 GGGGA-AGGAGGGAAACGAG-AGATGTAACAAAACCAGATCAA-AGA-GAAGATGGGTGG 822
Query 685 ATGGA-GATTGAGCTTGGGGAATTCTTCACTGAAGGAGAAATGTATAGTGATGAAATTGA 743
||||| | | |||||||| |||||||||| ||||| | || || |||||||||||||
Sbjct 823 ATGGAAGCT-GAGCTTGGTGAATTCTTCAATGAAG-A-AAG-GT---GTGATGAAATTGA 875
Query 744 GATAAGTGCTCTAGAGACTAAGTTGC-T-CAATTGGAAGCGCGGCTTGATCATTCTAGGA 801
| | |||| | | |||| ||||| | | | ||||||| | || |||||||||| ||||
Sbjct 876 GTTTAGTGTTATTGAGATTAAGTCCCCTTC--TTGGAAGAGTGGTTTGATCATTCAAGGA 933
Query 802 ATTGAAATCCGTCCTGCAAAAA 823
|| ||| |||| ||| | ||||
Sbjct 934 ATCGAATTCCGCCCTACGAAAA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5