BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330886
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45105.2 | Symbols: ZIP8 | zinc transporter 8 precursor | ch... 942 0.0
> AT5G45105.2 | Symbols: ZIP8 | zinc transporter 8 precursor |
chr5:18223453-18224946 REVERSE LENGTH=900
Length=900
Score = 942 bits (510), Expect = 0.0
Identities = 564/591 (95%), Gaps = 0/591 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACGACTACACAACACATGAATCAAATCTTCCTCGTACTCCTCCTCATCTCCTTC 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCTACGACTACTCAACACATGAATCAAATCTTCCTCGTACTCCTCCTAATCTCCTTC 60
Query 61 GCAATCTCTCCGGCAATATCAACGGTTCCAAAAGAATGTGAGGCCGACTCAACAGAATCT 120
|||||||||||||| || |||||||||||||||||||| ||| |||| |||||||| |||
Sbjct 61 GCAATCTCTCCGGCGATCTCAACGGTTCCAAAAGAATGCGAGACCGATTCAACAGACTCT 120
Query 121 TGCATCGATAAAACCAAAGCCTTACCTCTCAAAATCGTAGCAATCGTTGCCATCCTCGTG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGCATCGATAAAACCAAAGCCTTACCTCTCAAAATTGTAGCAATCGTTGCCATCCTCGTG 180
Query 181 ACAAGCATGCTTGGAGTTACAGCTCCTCTCTTTAGCCGATATGTCACTTTCCTGCATCCA 240
||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ACAAGCATGATCGGAGTCGCAGCTCCTCTCTTTAGCCGATATGTCACATTCCTGCATCCA 240
Query 241 GACGGTAAAATCTTTATGATCATCAAGTGTTTTGCATCCGGGATCATCCTAGGAACCGGT 300
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GATGGTAAAATCTTTATGATCATTAAGTGTTTTGCATCCGGGATCATCCTAGGAACCGGC 300
Query 301 TTCATGCATGTTTTGCCGGATTCTTTCGAGATGTTGTCCTCTCCATGTCTTGAAGACAAT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCATGCATGTTTTGCCCGATTCTTTCGAGATGTTGTCCTCTCCATGTCTTGAAGACAAT 360
Query 361 CCATGGCACAAATTTCCCTTCACGGGCTTTGTCGCTATGTTGTCCGGTCTTGTAACTCTC 420
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 CCATGGCACAAGTTTCCCTTCACTGGCTTTGTCGCTATGTTGTCCGGTCTTGTAACTCTT 420
Query 421 GCTATTGACTCTATTGCTACAAGTCTCTACACCAAGAAAGCTTTTGCTGATGACAGCGAA 480
|||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 421 GCTATTGACTCTATCGCTACAAGTCTCTACACCAAGAAAGCTGTCGCTGATGACAGCGAA 480
Query 481 GAAAAGACTACTCCAATGATAATTCAAATCGATCATTTGCCTCTAACAACTAAAGAACGT 540
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAAGGACTACTCCTATGATAATTCAAATCGATCATTTGCCTCTAACAACTAAAGAACGT 540
Query 541 AGCTCTACATGCTCAAAACAACTATTGCGGTACCGAGTTATCGCCATGGTG 591
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 AGCTCTACATGCTCAAAACAACTATTGCGGTACCGAGTTATCGCCACGGTG 591
Score = 270 bits (146), Expect = 2e-71
Identities = 168/179 (94%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 829 AGCGTTTACAAAGACAACAGTCCAACCGCATTGATCACAGTTGGACTGCTCAATGCATGT 888
|||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| |||
Sbjct 685 AGCGTTTACAAAGACAACAGTCCAACAGCATTAATCACGGTAGGACTGCTCAATGCTTGT 744
Query 889 TCCGCAGGATTGCTCATTTATATGGCACTCGTAGATCTTCTAGCCGCAGAGTTTATGGGA 948
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 745 TCTGCAGGATTGCTCATTTATATGGCACTTGTAGATCTTCTAGCCGCAGAGTTTATGGGA 804
Query 949 TCTATGCTCCAAGGAAGCGTCAAACTTCAGCTTAACTGCTTCGGTGCGGCTTTGCTTGG 1007
|||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 805 TCTATGCTCCAAAGAAGCGTCAAGCTTCAGCTTAACTGCTTCGGGGCAGCTTTGCTTGG 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5