BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330887

Length=1029
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45105.2 | Symbols: ZIP8 | zinc transporter 8 precursor | ch...   128    1e-28
  AT2G04032.1 | Symbols: ZIP7 | zinc transporter 7 precursor | ch...   110    4e-23


> AT5G45105.2 | Symbols: ZIP8 | zinc transporter 8 precursor | 
chr5:18223453-18224946 REVERSE LENGTH=900
Length=900

 Score =  128 bits (69),  Expect = 1e-28
 Identities = 96/109 (88%), Gaps = 1/109 (1%)
 Strand=Plus/Plus

Query  616  TTATCTCTA-GGTGCAACAAATGACACATGCACCATTAAAGGTCTCATTGCAGCTCTTTG  674
            ||||| | | |||||||| || ||||||||||| |||||||| || ||||||||||||||
Sbjct  578  TTATCGCCACGGTGCAACCAACGACACATGCACTATTAAAGGCCTTATTGCAGCTCTTTG  637

Query  675  CTTCCATCAAATGTTTGAAGGCATGGGTCTTGGAGGTTGCATCCTCCAG  723
            ||||||||||||||| ||||| |||||||| || ||||||||||| |||
Sbjct  638  CTTCCATCAAATGTTCGAAGGGATGGGTCTCGGCGGTTGCATCCTTCAG  686


> AT2G04032.1 | Symbols: ZIP7 | zinc transporter 7 precursor | 
chr2:1289832-1291383 FORWARD LENGTH=1342
Length=1342

 Score =  110 bits (59),  Expect = 4e-23
 Identities = 233/315 (74%), Gaps = 20/315 (6%)
 Strand=Plus/Plus

Query  658   CTCATTGCAGCTCTTTGCTTCCATCAAATGTTTGAAGGCATGGGTCTTGGAGGTTGCATC  717
             ||||| ||||| ||||| ||||||||| | |||||||| ||||| || || |||| ||||
Sbjct  839   CTCATCGCAGCGCTTTGTTTCCATCAACTCTTTGAAGGAATGGGACTCGGTGGTTCCATC  898

Query  718   CTCCAGGCGGAATATACAACTGTGAAA-AAGTT-CATGATGGCCTTCTTT-TTCGCGGTT  774
              | || ||| ||| || ||  |  ||| || ||  |  ||||  || ||| ||  |||| 
Sbjct  899   TTACAAGCGCAATTTA-AA-AGCAAAACAAATTGGACAATGGTGTT-TTTCTTTTCGGTC  955

Query  775   ACAACACCATTTGGGATTGTTTTAGGGATTGC-ATTGTCGAGCATTTAT-AGG-GATAAC  831
             ||||||||||||||||||||||||||||| || ||     || || ||| | | || || 
Sbjct  956   ACAACACCATTTGGGATTGTTTTAGGGATGGCCATACAAAAG-ATATATGATGAGACAA-  1013

Query  832   AGCCCGACCGCGTTGATCACTGTCGGGCTGCTC-AATGCCTGCTCTGCAGGACTGCTT-A  889
              | || || |||||||||  ||| ||| | ||  ||||| |||||||||||| || || |
Sbjct  1014  -GTCCAACTGCGTTGATCGTTGTGGGGGT-CTTGAATGCGTGCTCTGCAGGATTG-TTGA  1070

Query  890   TCTACATGGCCCTCGTTGACCTTCTAG-CGGC-TGAGTTCATGGGACCAAAGCTCCAAGG  947
             | || |||||||| ||| | || || | |  | ||| ||| | ||||||||| | |||||
Sbjct  1071  TTTATATGGCCCTTGTTAATCT-CTTGGCT-CATGAATTCTTCGGACCAAAGATACAAGG  1128

Query  948   CAACATCAAGCTTCA  962
              || || || |||||
Sbjct  1129  GAATATTAAACTTCA  1143



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50435083588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5