BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330891

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45040.1 | Symbols:  | Cytochrome c | chr5:18175371-18176888...   767    0.0  
  AT5G45030.1 | Symbols:  | Trypsin family protein | chr5:1817247...   213    1e-54


> AT5G45040.1 | Symbols:  | Cytochrome c | chr5:18175371-18176888 
REVERSE LENGTH=760
Length=760

 Score =  767 bits (415),  Expect = 0.0
 Identities = 495/533 (93%), Gaps = 7/533 (1%)
 Strand=Plus/Plus

Query  1    ATGAGTCTTCTTCTCTCTTGTGCCTCTGCTCGCACCTCCAATCTTTTTTGTTCCTCCCAA  60
            ||||| ||| |||||||| |||||||| ||  ||||||||| ||||||||||||||||||
Sbjct  38   ATGAGACTTGTTCTCTCTGGTGCCTCTTCTTTCACCTCCAACCTTTTTTGTTCCTCCCAA  97

Query  61   AAGGTCAATGGAAGA-GAAAGAGAATTGCAATACCCAA-TTCTTCCAAATCACAACAAAG  118
             |||||||||||||| |||| |||| || || |||||| ||| || ||| ||||||||||
Sbjct  98   CAGGTCAATGGAAGAGGAAA-AGAACTGAAAAACCCAATTTC-TCTAAACCACAACAAAG  155

Query  119  ATTTGAACTTTCTGATAAAGAAGTTAGCTCAGCCACTCACGGCGGTTCTACTTGCTGTTT  178
            ||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct  156  ATTTGGACTTTCTGTTAAAGAAGTTAGCTCCGCCACTCACGGCGGTTTTACTTGCTGTTT  215

Query  179  CACCCATCATCTGTTTCCCTCCAGAATCTCTAGGGCAGACTTTGGATATACAGAGAGGAG  238
            || ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  216  CA-CC--CATCTGTTTCCCTCCAGAATCTCTTGGGCAGACTTTGGATATACAGAGAGGAG  272

Query  239  CAACATTGTTTAATAGAGCTTGTATCGGGTGTCATGATACAGGTGGAAATATTATTCAAC  298
            | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  273  CTACATTGTTTAATAGAGCTTGTATCGGGTGTCATGATACAGGTGGAAACATTATTCAAC  332

Query  299  CGGGCGCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACCGAGGAAGAGA  358
            | || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  333  CTGGTGCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACTGAGGAAGAAA  392

Query  359  TATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGAGAGAAATGCACAC  418
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  393  TATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGTGAGAAATGCACAC  452

Query  419  CGAGAGGACAATGTACCTTTGGACCGCGGTTGCAAGACGAAGAAATCAAGCTTCTGGCTG  478
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  453  CGAGAGGACAATGTACCTTTGGACCGCGGTTGCAGGACGAAGAAATCAAGCTTCTCGCTG  512

Query  479  AATTTGTAAAGTTTCAAGCTGACAAAGGTTGGCCAAATGTATCTACCGACTAG  531
            ||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||
Sbjct  513  AATTTGTAAAGTTTCAAGCTGACCAAGGCTGGCCAACTGTATCTACGGACTAG  565


> AT5G45030.1 | Symbols:  | Trypsin family protein | chr5:18172471-18176207 
FORWARD LENGTH=2816
Length=2816

 Score =  213 bits (115),  Expect = 1e-54
 Identities = 129/136 (95%), Gaps = 0/136 (0%)
 Strand=Plus/Minus

Query  396   GGGATTTGGAGAGAAATGCACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAAGA  455
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  2424  GGGATTTGGTGAGAAATGCACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAGGA  2365

Query  456   CGAAGAAATCAAGCTTCTGGCTGAATTTGTAAAGTTTCAAGCTGACAAAGGTTGGCCAAA  515
             |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| 
Sbjct  2364  CGAAGAAATCAAGCTTCTCGCTGAATTTGTAAAGTTTCAAGCTGACCAAGGCTGGCCAAC  2305

Query  516   TGTATCTACCGACTAG  531
             ||||||||| ||||||
Sbjct  2304  TGTATCTACGGACTAG  2289


 Score =  167 bits (90),  Expect = 1e-40
 Identities = 96/99 (97%), Gaps = 0/99 (0%)
 Strand=Plus/Minus

Query  201   AGAATCTCTAGGGCAGACTTTGGATATACAGAGAGGAGCAACATTGTTTAATAGAGCTTG  260
             ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  2814  AGAATCTCTTGGGCAGACTTTGGATATACAGAGAGGAGCTACATTGTTTAATAGAGCTTG  2755

Query  261   TATCGGGTGTCATGATACAGGTGGAAATATTATTCAACC  299
             ||||||||||||||||||||||||||| |||||||||||
Sbjct  2754  TATCGGGTGTCATGATACAGGTGGAAACATTATTCAACC  2716


 Score = 56.5 bits (30),  Expect = 2e-07
 Identities = 32/33 (97%), Gaps = 0/33 (0%)
 Strand=Plus/Minus

Query  300   GGGCGCAACGCTTTTCACAAAAGACCTCGAAAG  332
             ||| |||||||||||||||||||||||||||||
Sbjct  2628  GGGTGCAACGCTTTTCACAAAAGACCTCGAAAG  2596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5