BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330893
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49810.1 | Symbols: | ARM repeat superfamily protein | chr3... 664 0.0
> AT3G49810.1 | Symbols: | ARM repeat superfamily protein | chr3:18474537-18476834
REVERSE LENGTH=2298
Length=2298
Score = 664 bits (359), Expect = 0.0
Identities = 392/408 (96%), Gaps = 2/408 (0%)
Strand=Plus/Plus
Query 393 GACGAGCTA-TGAGATTTTGGGGACTTTGAAGAAAGCTAAAGGTCAAGCTAGGGTTCATG 451
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GACGAGCTATTGAGATTTTGGGGACTTTGAAGAAAGCTAAAGGTCAAGCTAGGGTTCATG 1051
Query 452 CGTTGAGTGAGCTTAAGCAGATTGTTGTTGCTCATCTTATGGCCAGGAAGACTGTTGTTG 511
| |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1052 CTTTGAGTGAGCTTAAACAGATTGTTATTGCTCATCTTATGGCGAGGAAGACTGTTGTTG 1111
Query 512 AAGAAGGAGGTGTCTCTGTGATCTCTTCTCTTTTGGGTCCTTTTACTTCTCATGCTGTTG 571
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 AAGAAGGTGGTGTCTCTGTGATCTCTTCTCTTTTGGGTCCTTTTACTTCTCATGCTGTTG 1171
Query 572 GATCTGAGGTTGTTGCTATTCTTGTCAGTCTTGATCTTGATTCGGATTCGAAATCCGGGT 631
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 1172 GATCTGAGGTTGTTGCTATTCTTGTGAGTCTTGATCTTGATTCTGATTCGAAATCCGGCT 1231
Query 632 TGATGCAACCGGCTAAGGTTTCTTTGATTGTTGATATGTTGAATGATGGATCCAATGAGA 691
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1232 TGATGCAACCAGCTAAGGTTTCTTTGATTGTTGATATGTTGAATGATGGATCTAATGAGA 1291
Query 692 CTAAAATCAATTGTGCGAGATTGATTAGAGGATTGGTGGAAGAGAAAGGGTTTAGAGCAG 751
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CTAAGATCAATTGTGCTAGATTGATTAGAGGATTGGTGGAAGAGAAAGGGTTTAGAGCAG 1351
Query 752 AGCTGGTTTCGAGTCATAGTTTGCTTGTTGGGTTAATGAGATTG-TTA 798
|||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1352 AGCTTGTTTCAAGTCATAGTTTGCTTGTTGGGTTAATGAGATTGGTTA 1399
Score = 656 bits (355), Expect = 0.0
Identities = 388/402 (97%), Gaps = 9/402 (2%)
Strand=Plus/Plus
Query 1 ATGCCGATGTTTCAGCCGTTAAAGAGAGATGGGTTCATAGGATTTGAAGGTGGTGGTGAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 553 ATGCCGATGTTTCAGCCGTTAAAGAGAGATGGGTTAATAGGATTTGAAGGTGGTGGTGAT 612
Query 61 GGGCAAGTCTTAGATCTGGATACGGCGGTGAAAGATGGAGTTCTCGGTGGTGTTAA---- 116
||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 613 GGGCAAGTCTTAGATCTGGATACTGCAGTGAAAGATGGAGTTCTCGGTGGTGTTAATGGT 672
Query 117 --T-G-G-TGGAGTTGTTGATGAGAAATTGGATCTGAAGAAGATGATAAAGGAGCTAGAT 171
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GGTGGTGTTGGAGTTGTTGATGAGAAATTGGATCTGAAGAAGATGATAAAGGAGCTAGAT 732
Query 172 TTACAAGATATACCTTCTGTTTTCATTTGTCCTATCTCGTTAGAGCCGATGCAAGATCCT 231
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 733 TTACAAGATATACCTTCTGTTTTCATTTGTCCTATCTCCTTAGAGCCGATGCAAGATCCT 792
Query 232 GTGACCTTGTGTACTGGTCAAACCTATGAAAGGTTAAACATTCACAAATGGTTTAACCTA 291
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GTGACTTTGTGTACTGGTCAAACCTATGAAAGGTTAAACATTCACAAATGGTTTAACCTA 852
Query 292 GGTCACTTGACTTGTCCTACTACAATGCAAGAGCTTTGGGATGATACGGTAACTCCTAAT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GGTCACTTGACTTGTCCTACTACAATGCAAGAGCTTTGGGATGATACGGTAACTCCTAAT 912
Query 352 AAAACTCTTCATCATTTGATCTATACTTGGTTCTCTCAGAAG 393
||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AAAACTCTTCATCATTTGATCTATACTTGGTTCTCTCAGAAG 954
Score = 643 bits (348), Expect = 0.0
Identities = 376/390 (96%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 796 TTAGTCGATATCTTACCGTCTTTTGACCCGGAATGTTTGGAGTTAGCTCTGTTTGTTCTT 855
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1510 TTAGTTGATATCTTACCGTCTTTAGACCCGGAATGTTTGGAGTTAGCTCTGTTTGTTCTT 1569
Query 856 GATGCTTTGTGTTCAGATATGGAAGGAAGAGTTGCTGTCAAAGACTCTGCAAACACGATA 915
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1570 GATGCTTTGTGTACAGACGTGGAAGGAAGAGTTGCTGTCAAAGACTCTGCAAACACAATA 1629
Query 916 CCGTATACCGTTAGGGTGCTGATGAGGGTGTCTGAGAATTGCACTAACTATGCGCTGTCG 975
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1630 CCTTATACAGTTAGGGTGCTGATGAGGGTGTCTGAGAATTGCACTAACTACGCGCTGTCG 1689
Query 976 ATTCTTTGGTCTGTCTGCAAATTAGCTCCAGAAGAATGTTCACCACTTGCTGTTGAGGTC 1035
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 ATTCTTTGGTCTGTCTGCAAATTAGCTCCAGAAGAATGTTCACCACTTGCTGTTGAGGTT 1749
Query 1036 GGTCTTGCTGCAAAGTTGTTACTCGTGATCCAGAGCGGGTGTGATGCAGCGTTGAAGCAG 1095
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 GGTCTTGCTGCAAAGCTGTTACTCGTGATCCAGAGCGGGTGTGATGCAGCGTTGAAGCAG 1809
Query 1096 CGGTCAGCGGAGCTACTCAAGCTCTGTAGTCTACATTATTCAGACACCATGTTTATTTCC 1155
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1810 CGGTCAGCAGAGCTACTTAAGCTTTGTAGTCTACATTATTCAGACACCATGTTTATTTCC 1869
Query 1156 AAATGCAAACTCACAAGGACAATCCAATAG 1185
||||||||||||||||||||||||||||||
Sbjct 1870 AAATGCAAACTCACAAGGACAATCCAATAG 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5