BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330900

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44973.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   209    7e-54
  AT1G31245.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   122    1e-27


> AT5G44973.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr5:18157642-18158207 REVERSE LENGTH=385
Length=385

 Score =  209 bits (113),  Expect = 7e-54
 Identities = 152/171 (89%), Gaps = 2/171 (1%)
 Strand=Plus/Plus

Query  59   ATTTAGAAGAAGGAAATACAAAAACAATCGATGTGAATCATGGAGGGATATGTGATACAT  118
            ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct  167  ATTTAGAAGAAGGGAATATAAAAAGAATCGATGTGAATCATGGAGGGATATGTGACACAT  226

Query  119  ACCTTGAGTGTGGAAAGATG-CTATGTTCTGATTATCGTCGGGCGTGTTGCGTAAATGGA  177
            ||||||||||||||  | || | ||||||||||||||||||||||||||||||||| |||
Sbjct  227  ACCTTGAGTGTGGAGGGTTGGC-ATGTTCTGATTATCGTCGGGCGTGTTGCGTAAACGGA  285

Query  178  AAGTGTATTTGCCGCAAACCAGGCCAAAATGTGCCAAACTGCCCAAACTAA  228
            || ||| | |||||||||| |||||||| | ||||  | ||||||||||||
Sbjct  286  AAATGTGTATGCCGCAAACAAGGCCAAACTCTGCCCGATTGCCCAAACTAA  336


 Score = 97.1 bits (52),  Expect = 6e-20
 Identities = 60/63 (95%), Gaps = 3/63 (5%)
 Strand=Plus/Plus

Query  1   ATGACCAACCTTTATTTTAAGACGGCTTTTCTTCTCTCCCTCTTGTT---GTCCTTCTCT  57
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct  28  ATGACCAACCTTTATTTTAAGACGGCTTTTCTTCTCTCCCTCTTGTTACTGTCCTTCTCT  87

Query  58  TAT  60
           |||
Sbjct  88  TAT  90


> AT1G31245.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr1:11165705-11165830 REVERSE LENGTH=126
Length=126

 Score =  122 bits (66),  Expect = 1e-27
 Identities = 109/129 (84%), Gaps = 6/129 (5%)
 Strand=Plus/Plus

Query  103  GGGATATGTGATACATACCTTGAGTGTGGAAAG-ATGCTATG-TTCTGATTATCGTCGGG  160
            |||||| |||| ||||||||||||||||||| | |||||||  || ||| ||||||||||
Sbjct  1    GGGATACGTGACACATACCTTGAGTGTGGAA-GTATGCTATTCTT-TGACTATCGTCGGG  58

Query  161  CGTGTTGCGTAAATGGAAAGTGTATTTGCCGCAAACCAG-GCCAAAATGTGCCAAACTGC  219
            ||||||||||||||||||| ||  | || ||||||| || |||||  |||||| || |||
Sbjct  59   CGTGTTGCGTAAATGGAAAATGCGTGTGTCGCAAAC-AGAGCCAATTTGTGCCCAATTGC  117

Query  220  CCAAACTAA  228
            ||||| |||
Sbjct  118  CCAAAATAA  126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10254620796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5