BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330931
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44630.1 | Symbols: | Terpenoid cyclases/Protein prenyltran... 2403 0.0
> AT5G44630.1 | Symbols: | Terpenoid cyclases/Protein prenyltransferases
superfamily protein | chr5:18003255-18005616 FORWARD
LENGTH=1699
Length=1699
Score = 2403 bits (1301), Expect = 0.0
Identities = 1529/1640 (93%), Gaps = 12/1640 (1%)
Strand=Plus/Plus
Query 41 ATTTTACAAAATTGCCACCCTCTCAATGGGGTGATCAGTTCCTCAAATTTTCCATGGCTG 100
||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 66 ATTTTACAAAATTGCCATCCTCCCAATGGGGTGATCAGTTCCTCAAGTTTTCCATTGCTG 125
Query 101 ATTCTGATTTTGATGCT-CTTGAAAGAGAGATTAAAGTACTAAAGCCTAAAGTAAGAGAG 159
|||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 126 ATTCGGATTTTGATG-TCCTTGAAAGAGAGATTGAAGTACTAAAGCCTAAAGTAAGAGAG 184
Query 160 AACATATTCATTTTGTCTTCCAGAGACAAAGACGCAATG-AAAAGAACAATTCTTTCTAT 218
||||||||| | | |||||||| |||||||||||| ||| ||||| ||||||||||||||
Sbjct 185 AACATATTCGTGTCGTCTTCCACAGACAAAGACGCGATGAAAAAG-ACAATTCTTTCTAT 243
Query 219 TCATTTTCTGAACAGTCTTGGTCTTTCATACCATTTTGAGAAGGAGATCGAAGAAAGCCT 278
|||||||||| ||||||||||||| || || |||||||||||||| |||||||| |||||
Sbjct 244 TCATTTTCTGGACAGTCTTGGTCTCTCTTATCATTTTGAGAAGGAAATCGAAGAGAGCCT 303
Query 279 GAAACATGCTTTCGACG-AGGTAGAAGATTTGATCGCGGATGAAAATGATTTGTACACAA 337
|||||||||||||| | || |||||||||||||||| ||||||||| | ||| ||||||
Sbjct 304 AAAACATGCTTTCGA-GAAGATAGAAGATTTGATCGCTGATGAAAATAAATTGCACACAA 362
Query 338 TCTCCACCATCTTTCGAGTTTTCAGAACATACGGTTACGACATGTCTTCGGATGTGTTCA 397
||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct 363 TCTCCACCATCTTCCGAGTTTTCAGGACATACGGTTACTACATGTCTTCGGATGTTTTCA 422
Query 398 ACAGATTCAAAGGAGACGACGGTAAATTCAAGGAAAGTTTAATAGAAGATGTTAGGGGTA 457
| | ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 423 AGATATTCAAAGGAGACGATGGTAAATTCAAGGAAAGTTTAATAGAAGATGTCAAGGGTA 482
Query 458 TGCTAAGCCTCTACGAAGCAGTGCACTTTGGGACAACGAAAGATCATATATTGGATGAAA 517
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 483 TGCTAAGCTTCTACGAAGCAGTGCACTTTGGGACAACGACAGATCATATATTGGATGAAG 542
Query 518 CCTCGTGCTTCACATTGAACCACTTGGAGCCACTAGCTACATGTCGCAGAGAGTGCCCAC 577
| | ||||||||||||||||||||||| ||||||||||| |||| |||| | ||||||
Sbjct 543 CTTTAAGCTTCACATTGAACCACTTGGAGTCACTAGCTACAGGTCGTAGAGCGAGCCCAC 602
Query 578 CACATATTTCAAAGCTTATACAAAATTC-CATTCACATACCTCAGCACCGGAACATCCAA 636
|||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||||
Sbjct 603 CACATATTTCAAAGCTTATACAAAATGCTC-TTCACATACCTCAGCACCGAAACATCCAA 661
Query 637 GC-TCTGGTTGCAAGGGAGTATATCTCGTTCTATGAACACGAAGAAGACCGCGACGAAAT 695
|| | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 662 GCGT-TGGTTGCAAGGGAGTATATCTCGTTCTATGAACACGAAGAGGACCACGACGAAAC 720
Query 696 ACTTTTTAAGCTAGCCAAGCTCAATTTCAAGTTCTTGCAGCTTCATTACTTCCAAGAATT 755
|||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACTTCTCAAGCTAGCTAAGCTCAATTTCAAGTTCTTGCAGCTTCATTACTTCCAAGAATT 780
Query 756 AAAAACCATCACAATGTGGTGGAGGGAATTAGACCATACATCAAACTTTCCACCTAACTT 815
||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |||||
Sbjct 781 AAAAACCATCACAATGTGGTGGACGAAATTAGACCATACATCAAACCTTCCACCAAACTT 840
Query 816 CAGAGAAAGAACTGTAGAGACTTGGTTTGCAGCATTGATGATGTACTTTGAGCCACAGTT 875
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 841 CAGAGAGAGAACTGTAGAGACATGGTTTGCAGCATTGATGATGTACTTCGAGCCACAATT 900
Query 876 TTCACTTGGGAGAATTATGTCGGCTAAGTTATACTTAGTAATTACATTTCTAGACGACGC 935
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 TTCACTTGGGAGAATTATGTCGGCTAAGTTATACTTAGTAATAACATTTCTAGACGACGC 960
Query 936 TTGTGATA-TACATGGTTCAATTCCTGATGTTGAGAGCCTGGTCGATTGTCTGGAAAGAT 994
||| |||| | ||||||||||| |||| ||||| ||||||| ||||||| |||||||||
Sbjct 961 TTGCGATACTT-ATGGTTCAATTTCTGAAGTTGAAAGCCTGGCCGATTGTTTGGAAAGAT 1019
Query 995 GGGATCCGGATTACATGGAAAATCTTCATGGTCACATGAAGACTGCCTTCAAATTTGTGA 1054
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1020 GGGATCCAGATTACATGGAAAATCTTCAAGGTCACATGAAGACTGCCTTCAAATTTGTGA 1079
Query 1055 TGTATCTTTTCGAAGAGTATGAAGAAATATTAAGGTCACAAGGAAGATCCTTTGTGTTGG 1114
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 TGTATCTTTTTAAAGAGTATGAAGAAATACTAAGGTCACAAGGAAGATCCTTTGTGTTGG 1139
Query 1115 AGAAGATGATAGAGGAGTTCAAGATAATTGCTAGGAAAAACCTCGAACTTGTCAAATGGG 1174
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1140 AGAAAATGATAGAAGAGTTCAAGATTATTGCTAGGAAAAACCTCGAACTTGTCAAATGGG 1199
Query 1175 CACGGGGAGGTCATGTGCCTAGCTTTGATGAGTATATAGAGTCTGGTGGAGCCGAGATTG 1234
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CACGTGGAGGTCATGTTCCTAGCTTTGATGAGTATATAGAGTCTGGTGGAGCCGAGATTG 1259
Query 1235 GTACATATGCCACCATAGCATGTTCCATCATGGGACTTGGAGAGATTGGTAAGAAGAAAG 1294
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1260 GTACATATGCAACCATAGCATGTTCCATCATGGGACTTGGAGAGATTGGTAAGAAGGAAG 1319
Query 1295 ATTTTGAGTGGCTAATATCTAGACCAAAGCTCGTTCGGACTTTAGGGGCAAAGACCCGTC 1354
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1320 CTTTTGAGTGGCTAATATCTAGACCAAAGCTCGTTCGGATTTTAGGTGCAAAGACCCGTC 1379
Query 1355 TCATGGATGACATAGCCGACTTTAAGGAGGATATGGAAAAAGGTTATACTGCAAATGCTG 1414
||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 1380 TCATGGATGACATAGCCGACTTTGAGGAGGACATGGAAAAAGGTTACACTGCAAATGCAC 1439
Query 1415 TCAACTATTACATGAACGAACACGGAGTTACAAAAGAAGAAGCCAATAGAGAACTTGAAA 1474
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1440 TCAACTATTACATGAACGAACACGGAGTTACAAAAGAAGAAGCCAGTAGAGAACTTGAAA 1499
Query 1475 AGATGAATGGAGATATGAACAAGATTGTAAACGAAGAGTGCTTGAAGATAAGTACCATGC 1534
||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 1500 AGATGAATGGAGATATGAACAAGATCGTAAACGAAGAATGCTTGAAGATAACTACCATGC 1559
Query 1535 CACGCCGAATTCTTATGCAATCCGTCAATTATGGACGTTCATTGGATGTTCTCTATACCG 1594
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1560 CACGCCGAATTCTTATGCAATCCGTCAATTATGCACGTTCATTGGATGTTCTCTATACCG 1619
Query 1595 CGGATGATGTCTACAACCACCGCGAAGGAAAACTCCAGGAATATATGAGCCTTTTGCTCG 1654
|||||||||| |||||||||||||||||||||||| | || |||||||| ||||||||||
Sbjct 1620 CGGATGATGTTTACAACCACCGCGAAGGAAAACTCAAAGAGTATATGAGGCTTTTGCTCG 1679
Query 1655 TAGATCCCATACTTCTTTAG 1674
||||||| ||||||||||||
Sbjct 1680 TAGATCCTATACTTCTTTAG 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5