BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330935
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44590.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1443 0.0
AT5G44600.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 817 0.0
> AT5G44590.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:17987591-17989227
FORWARD LENGTH=1050
Length=1050
Score = 1443 bits (781), Expect = 0.0
Identities = 959/1043 (92%), Gaps = 19/1043 (2%)
Strand=Plus/Plus
Query 7 ATCTCATCTCTACATTTACTTTCTTGCAACCAAAGTTTCTTCCTTTCATCTCAATTTTCA 66
||||||| |||||||| ||||||||||||| |||||| ||| ||| ||||||||||||||
Sbjct 7 ATCTCATATCTACATTCACTTTCTTGCAACAAAAGTTGCTTGCTTACATCTCAATTTTCA 66
Query 67 AAACCCTTGTTCATAAACCTTTCTCAGAAGAAACCCAGATTCTCAATTTCCTTTTGCCTC 126
||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 67 AAACCCTTGTTTATAAACCAAACTCAGAAGAAACTCAGATTCTCGATTTCCTTTTGCCTC 126
Query 127 AAGCAAAGTGAATCTGGCAGCAAAGAACACGACGACGAAGAAGAAGAAGAGTTTACTGTT 186
||||||| |||||||| | || || ||| || |||||||||||||| ||||| |||
Sbjct 127 AAGCAAAACGAATCTGGTATTGAACAAGTCGAAGAAGAAGAAGAAGAAGAATTTACCGTT 186
Query 187 GTGACAGCCGTAAGAAGCAGATACAATGAGATTGTTATAGTCGATACTTTTGCTTCTAGA 246
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 187 GTGACGGCCGTAAAAAGCAGATACAATGAGATTGTTATAGTGGATACTTTTGCTTCTAGA 246
Query 247 TATCTTCTTCTTGACTCCACTAGGAATGTGCATAGTGTTATCAATAAAGGAGGCCAGAAC 306
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TATCTTCTTCTTGATTCCACTAGGAATGTGCATAGTGTTATCAATAAAGGAGGCCAGAAT 306
Query 307 TGGACTGGAGCTTATTGGGTAAA-------A-TGTGGTT--TTTTG--TCCTATCAACAT 354
||||||||||||||||||||||| | |||| || ||||| ||||||||||||
Sbjct 307 TGGACTGGAGCTTATTGGGTAAATGTTGTTATTGTGTTTAATTTTGAATCCTATCAACAT 366
Query 355 TTTTGTTTGCAGGATGAGTCTGCGAGTTTGCCTCCTATTATCCCTAATGGTCCCATTGCA 414
||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 367 TTTTGTTTGAAGGACGAGTCTGCGTGTTTGCCGCCTATTATCCCTAATGGTCCCATTGCA 426
Query 415 ATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGCTGTGGCCTTCAACG 474
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 427 ATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGTTGTGGCCTTCAACG 486
Query 475 AAGCTTGAAGGTTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGG 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GAGCTTGAAGGTTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGG 546
Query 535 TTGTCTGAGCTAGAGATACCGACATCAAAAGGGGGTAGACTTTGTATTCATGTAGATGAT 594
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 547 CTGTCTGAGCTAGAGATACCGACATCAAAAGGCGGTAGACTTTGTATTCATGTAGATGAT 606
Query 595 GCTCTCTCTCCTTCTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTC 654
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GCTCTCTCTCCTTGTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTC 666
Query 655 GCTGATGGAAAAGTT-TTAGATCAGCTGCAACATATTCCAATGTGGCTGGAACTGGCTAG 713
|| ||||||||||| || |||||||||||| | |||||||||||||| |||||||||||
Sbjct 667 GCGGATGGAAAAGTGCTT-GATCAGCTGCAAGAGATTCCAATGTGGCTAGAACTGGCTAG 725
Query 714 TAGGTTAATGCCTAACGGTCGCCTTATGGTCAATTGTGCGGGAATCGAAACAGAGGTACA 773
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 726 TAGGTTAATGCCTAACGGTCGCCTTATGGTGAATTGTGCGGGAATCGAAACAGAAGTAAA 785
Query 774 GAATGGAAAACCACAGTTGGTGTTAGATGATTTAGCTTGGATGTTGAATTCTACAGTCAA 833
||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 786 GAATGGAAAACCAGAGTTGGTGTTAGATGATTTGGCTTGGATGTTGAATTCTACTGTCAA 845
Query 834 GATCTTCTCAGAAGCATTTCCTAGACAAGTTAGCTGGAAGAGAACACCAGATTCACAAGG 893
|||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 846 GATCTTATCAGAAGCATTTCCTGGACAAGTTAGTTGGAAGAGAACACCAGATTCAGAAGG 905
Query 894 TCTCAACTTTGTTGCCTTAACCGGAGGCTTACCTGATCGTAGTGACTGGTCTAACAAGGT 953
|||||||||||| || ||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 906 TCTCAACTTTGTGGCATTAACAGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAAGGT 965
Query 954 TCCAGTCCGTTTAAGCGAATCAGTGAAGCTATGGAAGCTTTGCGAGAC---CCCGTTA-A 1009
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 966 TCCAGTCCGTTTAAGCGAATCAGTGAAGCTATGGAAGCTTTGCGAGACGGTCCCTTTGCA 1025
Query 1010 ATATCAGTGCTTTGAATGCATCT 1032
| || |||||||||||||||||
Sbjct 1026 AC-TCGGTGCTTTGAATGCATCT 1047
> AT5G44600.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:17989861-17991672
FORWARD LENGTH=1161
Length=1161
Score = 817 bits (442), Expect = 0.0
Identities = 571/635 (90%), Gaps = 2/635 (0%)
Strand=Plus/Plus
Query 366 GGATGAGTCTGCGAGTTTGCCTCCTATTATCCCTAATGGTCCCATTGCAATCTACGGCTT 425
|||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 372 GGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCGTTGCAATCTACGGCTT 431
Query 426 GGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGCTGTGGCCTTCAACGAAGCTTGAAGG 485
||||||||||||||||||||||||||| |||||| |||||||| ||| | |||| |||||
Sbjct 432 GGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACAATGCAGCTGGAAGG 491
Query 486 TTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGTTGTCTGAGCT 545
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGTTGTCTGAGCT 551
Query 546 AGAGATACCGACATCAAAAGGGGGTAGACTTTGTATTCATGTAGATGATGCTCTCTCTCC 605
||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 552 AGAGAAACCGACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGATGATGCTCTCTCTCC 611
Query 606 TTCTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTCGCTGATGGAAA 665
||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 612 TTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTGTTTGCTGATGGGAA 671
Query 666 AGTTTTAGATCAGCTGCAACATATTCCAATGTGGCTGGAACTGGCTAGTAGGTTAATGCC 725
|| ||||||||||||||| | | || || ||| | || |||||||||||| |||||||
Sbjct 672 GGTCTTAGATCAGCTGCAAGAGGTCCCGATTTGGTTAGAGCTGGCTAGTAGGCTAATGCC 731
Query 726 TAACGGTCGCCTTATGGTCAATTGTGCGGGAATCGAAACAGAGGTACAGAATGGAAAACC 785
|||||||||| ||||||| || |||||||||||||||||||| | ||||||||||| ||
Sbjct 732 TAACGGTCGCATTATGGTGAACTGTGCGGGAATCGAAACAGAACTTCAGAATGGAAAGCC 791
Query 786 ACAGTTGGTGTTAGATGATTTAGCTTGGATGTTGAATTCTACAGTCAAGATCTTCTCAGA 845
|||||| |||||||||| | ||| ||||||||||||| || ||||||||||| |||||
Sbjct 792 TCAGTTGTTGTTAGATGACTCAGCCGGGATGTTGAATTCCACCGTCAAGATCTTGTCAGA 851
Query 846 AGCATTTCCTAGACAAGTTAGCTGGAAGAGAACACCAGATTCACAAGGTCTCAACTTTGT 905
|||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 852 AGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCAGATTCGGAAGGTCTCAACTTTCT 911
Query 906 TGCCTTAACCGGAGGCTTACCTGATCGTAGTGACTGGTCTAACAAGGTTCCAGTCCGTTT 965
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 912 TGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAAGGTTCCAGTTCGTTT 971
Query 966 AAGCGAA-TCAGTGAAGCTATGGAAGCTTTGCGAG 999
| ||| | |||||||| |||||||||||| |||
Sbjct 972 TTGTGAAGT-AGTGAAGCAATGGAAGCTTTGTGAG 1005
Score = 287 bits (155), Expect = 2e-76
Identities = 285/343 (83%), Gaps = 27/343 (8%)
Strand=Plus/Plus
Query 7 ATCTCATCTCTACATTTACTTTCTTGCA-ACCAAAGTTTCTTCCTTTCATCTCAATTTTC 65
|||||||||||||||| ||||||| | | || ||| || |||||||||||| ||||||||
Sbjct 34 ATCTCATCTCTACATTCACTTTCTCG-ATACGAAAATTGCTTCCTTTCATCCCAATTTTC 92
Query 66 AAAACCCTTGTTCATAAACCTTTCTCAGAAGAAACCCAGATTCTCAATTTCCTTTTGCCT 125
||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||| ||
Sbjct 93 AAAACCCTTGTTCCTAAACCAATCTCAGAACAAACCCAGATTCTCAATTTCATTTTGTCT 152
Query 126 CAAGCAAAGTGAATC-TG--G-CA-GCAAA--GAAC---A------C---GACGACGAAG 166
|||||||||| |||| || | | ||||| ||| | | || || ||||
Sbjct 153 CAAGCAAAGT-AATCATGACGAGAGGCAAATTCAACAAGACTCTGCCAAAGAAGAAGAAG 211
Query 167 AAGAAGAAG-AGTTTACT--GTTGTGACAGCCGTAAGAAGCAGATACAATGAGATTGTTA 223
||||||||| || || | ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 212 AAGAAGAAGAAGAGTATTGGGTTGTTACAGCAGTAAGAAGCAGATACAATGAGATTGTTA 271
Query 224 TAGTCGATACTT-TTGCTTCTAGATATCTTCTTCTTGACTCCACTAGGAATGTGCATAGT 282
|||| |||||| || |||| ||||||||||| ||||| || |||| |||||||||||||
Sbjct 272 TAGTGGATACTGCTT-CTTCCAGATATCTTCTCCTTGATTCAACTAAGAATGTGCATAGT 330
Query 283 GTTATCAATAAAGGAGGCCAGAACTGGACTGGAGCTTATTGGG 325
|||||||||||||||||||| || ||||||||| |||||||||
Sbjct 331 GTTATCAATAAAGGAGGCCAAAATTGGACTGGATCTTATTGGG 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5