BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330953
Length=216
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26010.1 | Symbols: PDF1.3 | plant defensin 1.3 | chr2:11087... 189 9e-48
AT5G44430.1 | Symbols: PDF1.2c | plant defensin 1.2C | chr5:179... 172 9e-43
AT2G26020.1 | Symbols: PDF1.2b | plant defensin 1.2b | chr2:110... 167 4e-41
AT5G44420.1 | Symbols: PDF1.2, PDF1.2A, LCR77 | plant defensin ... 150 4e-36
AT1G75830.1 | Symbols: LCR67, PDF1.1 | low-molecular-weight cys... 150 4e-36
> AT2G26010.1 | Symbols: PDF1.3 | plant defensin 1.3 | chr2:11087348-11087944
FORWARD LENGTH=495
Length=495
Score = 189 bits (102), Expect = 9e-48
Identities = 102/102 (100%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 115 AATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACATGGATCTTGCAACTAT 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 AATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACATGGATCTTGCAACTAT 264
Query 175 GTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 216
||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 306
Score = 128 bits (69), Expect = 2e-29
Identities = 100/114 (88%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 1 ATGGCTAAGTTTGCTTCCATCATCACCCTT-ATCTTCGCTGCTCTTGTTCTCTTTGCTGC 59
|||||||||| |||| ||||||||| | || ||||||||||||||||||||||||||||
Sbjct 64 ATGGCTAAGTCTGCTGCCATCATCA-CTTTCCTCTTCGCTGCTCTTGTTCTCTTTGCTGC 122
Query 60 TTTTGGTGAAAGCACCAACAATGGTGGAAGCACAAAAGTTTTGCGAGAAGCCAA 113
||||| || ||||| | ||||||||||||||| ||||| |||||||||||||
Sbjct 123 TTTTG---AA-GCACCGATAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAA 172
> AT5G44430.1 | Symbols: PDF1.2c | plant defensin 1.2C | chr5:17908945-17909507
REVERSE LENGTH=453
Length=453
Score = 172 bits (93), Expect = 9e-43
Identities = 110/118 (93%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 99 TTTGCGAGAAGCCAATAATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACA 158
|||||| ||| || |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 191 TTTGCG-GAA-ACAGTAATGCATGCAAGAATCAGTGCATTAACCTTGAGGGAGCAAAACA 248
Query 159 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 216
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 249 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGTTACGTCCCATGTTAA 306
Score = 139 bits (75), Expect = 9e-33
Identities = 102/114 (89%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 1 ATGGCTAAGTTTGCTTCCATCATCACCCTT-ATCTTCGCTGCTCTTGTTCTCTTTGCTGC 59
|||||||||| |||| ||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 64 ATGGCTAAGTCTGCTACCATCATCA-CCTTCCTTTTCGCTGCTCTTGTTCTCTTTGCTGC 122
Query 60 TTTTGGTGAAAGCACCAACAATGGTGGAAGCACAAAAGTTTTGCGAGAAGCCAA 113
||||| || ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 123 TTTTG---AA-GCACCAACAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAA 172
> AT2G26020.1 | Symbols: PDF1.2b | plant defensin 1.2b | chr2:11089250-11089597
FORWARD LENGTH=274
Length=274
Score = 167 bits (90), Expect = 4e-41
Identities = 98/102 (96%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 115 AATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACATGGATCTTGCAACTAT 174
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 173 AATGCATGCAAGAATCAGTGCATTAACCTTGAAGGAGCAAAACATGGATCTTGCAACTAT 232
Query 175 GTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 216
|||||||||||||||||||||||||||||| |||||||||||
Sbjct 233 GTCTTCCCAGCTCACAAGTGTATCTGTTACGTCCCATGTTAA 274
> AT5G44420.1 | Symbols: PDF1.2, PDF1.2A, LCR77 | plant defensin
1.2 | chr5:17907069-17907598 REVERSE LENGTH=438
Length=438
Score = 150 bits (81), Expect = 4e-36
Identities = 103/113 (91%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 1 ATGGCTAAGTTTGCTTCCATCATCACCCTTATCTTCGCTGCTCTTGTTCTCTTTGCTGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 ATGGCTAAGTTTGCTTCCATCATCACCCTTATCTTCGCTGCTCTTGTTCTCTTTGCTGCT 108
Query 61 TTTGGTGAAAGCACCAACAATGGTGGAAGCACAAAAGTTTTGCGAGAAGCCAA 113
|| | | ||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 109 TTCG---AC-GCACCGGCAATGGTGGAAGCACAGAAGTTGTGCGAGAAGCCAA 157
> AT1G75830.1 | Symbols: LCR67, PDF1.1 | low-molecular-weight cysteine-rich
67 | chr1:28472357-28472891 FORWARD LENGTH=428
Length=428
Score = 150 bits (81), Expect = 4e-36
Identities = 106/118 (90%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 99 TTTGCGAGAAGCCAATAATGCGTGCAAGAATCAGTGCATTAACCTTGAGGGGGCAAAACA 158
|||||| ||| || ||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 176 TTTGCG-GAA-ACAGTAACGCGTGCAAGAATCAGTGCATTAACCTTGAGAAAGCACGACA 233
Query 159 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAGTGTATCTGTTACTTCCCATGTTAA 216
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 234 TGGATCTTGCAACTATGTCTTCCCAGCTCACAAATGTATCTGCTACTTCCCATGTTAA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9651407808
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5