BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330954
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20235.1 | Symbols: CYP71A28 | cytochrome P450, family 71, s... 279 3e-74
AT2G30750.1 | Symbols: CYP71A12 | cytochrome P450, family 71, s... 250 3e-65
> AT4G20235.1 | Symbols: CYP71A28 | cytochrome P450, family 71,
subfamily A, polypeptide 28 | chr4:10929146-10931277 REVERSE
LENGTH=1023
Length=1023
Score = 279 bits (151), Expect = 3e-74
Identities = 301/369 (82%), Gaps = 28/369 (8%)
Strand=Plus/Plus
Query 14 TATTAATATCTCTGTG-TATAACGACATTCTTAG-CTCTTATGTTCATAAAATCACGAT- 70
|||| || ||||| || | | || || ||||||| || || | ||| |||| ||| |
Sbjct 5 TATTGATCTCTCTATGCT-TCACCACTTTCTTAGCCT-TTCTCTTCCTAAACCCAC--TC 60
Query 71 C-CAAACGAACCACCA-CA--AAA-CTGAACCCACCACCGTCTCCATGGCGGCTTCCAGT 125
| |||||||||||||| || ||| || |||| |||||| ||||| ||||||||||| ||
Sbjct 61 CTCAAACGAACCACCACCACCAAACCT-AACCAACCACCCTCTCCCTGGCGGCTTCCGGT 119
Query 126 GATAGGAAACCTCCACCAGCTTAGCCTCCACCCTCACCGCTCCCTCCATTCCCTCAGCCT 185
|| ||| ||||||||||||| ||||||||||||||||||||| | | ||||||||||||
Sbjct 120 TATCGGATACCTCCACCAGCTCAGCCTCCACCCTCACCGCTCCTTTCGTTCCCTCAGCCT 179
Query 186 CCGC-TATGGACCGCTCATGCTCCTTCACTTCGGTCGTGTCCCCACCCTCG-T-----A- 237
|||| ||||| |||||||||||||||||||||||||||||||| ||||||| | |
Sbjct 180 CCGCCTATGGTCCGCTCATGCTCCTTCACTTCGGTCGTGTCCCTACCCTCGATTCTCGAA 239
Query 238 GTCT----CATCCGCTGACGTAGCTCATGACGTCATGAAAACAAACGATCTTAAGTTCGC 293
|| | ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 240 GTATATATCATCCTCTGACGTAGCTCATGACGTCATGAAAACACACGATCTTAAGTTTGC 299
Query 294 CGACCGCCCCAAAAGGAAAGCTGTTTCTATGTTTCTGAATGGTGGGCGAGATGTGGCATT 353
| |||| ||||||| |||||||| ||| || | ||||||||| |||||||||| ||
Sbjct 300 CAACCGTCCCAAAACCAAAGCTGTCGATATAATTATTAATGGTGGGAGAGATGTGGC-TT 358
Query 354 T-TCC-CCT 360
| ||| |||
Sbjct 359 TCTCCTCCT 367
Score = 76.8 bits (41), Expect = 5e-13
Identities = 61/70 (87%), Gaps = 4/70 (6%)
Strand=Plus/Plus
Query 401 AAATGGTTCGGTCCTTTGAGAAAGTAAGAGAAGAAGAGATAA-A-C-GTAATGATGGAGA 457
|||||||| ||||||||||||||||||||||||||||||||| | | || || |||| ||
Sbjct 425 AAATGGTTAGGTCCTTTGAGAAAGTAAGAGAAGAAGAGATAACATCAGTGAT-ATGGGGA 483
Query 458 AGGTGGAGAA 467
|| | |||||
Sbjct 484 AGCTTGAGAA 493
> AT2G30750.1 | Symbols: CYP71A12 | cytochrome P450, family 71,
subfamily A, polypeptide 12 | chr2:13099336-13101413 REVERSE
LENGTH=1686
Length=1686
Score = 250 bits (135), Expect = 3e-65
Identities = 347/443 (78%), Gaps = 40/443 (9%)
Strand=Plus/Plus
Query 72 CAAACGAACCACC-ACAAAACTGAACCCACCACCGTCTCCATGGCGGCTTCCAG-TGATA 129
|||||||||| || || ||| ||||| |||||| ||||||||| ||||||| | ||||
Sbjct 114 CAAACGAACCGCCAAC-AAAGTGAACTTACCACCATCTCCATGGAGGCTTCC-GTTGATT 171
Query 130 GGAAACCTCCACCAGCTTAGCCTCCACCCTCACCGCTCCCTCCATTCCCTCAGCCTCCGC 189
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 172 GGTAACCTCCACCAGCTTAGCCTCCACCCTCACCGTTCCCTCCATTCCCTAAGCCTTCGG 231
Query 190 TATGGACCGCTCATGCTCCTTCACTTCGGTCGTGTCCCCACCCTCGTAGTCTCATCCGCT 249
|| ||||| |||||||||||||| || || |||||||||| |||||||| || ||||
Sbjct 232 TACGGACCACTCATGCTCCTTCATTTTGGCCGTGTCCCCATACTCGTAGTATCCTCCGGG 291
Query 250 GACGTAGCTCATGACGTCAT-GAAAACAAACGATCTTAAGTTCGCCGACCGCCCCAAAAG 308
|| | |||||| || || || ||||||| ||||||||||||| ||| ||||||| | |
Sbjct 292 GAAGCAGCTCAAGAGGT-ATTGAAAACACACGATCTTAAGTTTGCCAACCGCCCGAGATC 350
Query 309 GAAAGCTGTTTCTATGT--TTCTGAATGGTGGGCGAGATGTGGCATTT--TCCCCT-T-- 361
||||| ||| | ||| || ||||||| ||||| ||||||| ||| |||| | |
Sbjct 351 AAAAGCCGTT-C-ATGGGCTTATGAATGGGGGGCGTGATGTGGTGTTTGGTCCC-TATGG 407
Query 362 ----T-TTCCC--CAGGT-AT-ATGTGT-T--ATGC--A-TCTGCTCAAC-AACAAAATG 405
| || ||| | | | |||| | || | | |||||||| | |||||||||
Sbjct 408 AGAATATTGGAGACAGATGAAGA-GTGTATGCATTCTCAATCTGCTCA-CGAACAAAATG 465
Query 406 GTT-CGGTCCTTTGAGAA-AGTAAGAGAAGAAGAGATAAACGTAATGATGGAGAAGGTGG 463
||| || ||||||||||| | |||||||||||||| |||| | |||||| ||||| |||
Sbjct 466 GTTGCG-TCCTTTGAGAAGA-TAAGAGAAGAAGAGCTAAATGAAATGATCAAGAAGCTGG 523
Query 464 AGAAGGCG-GCTTCTTCTTCTTC 485
|||| || | ||||||||||||
Sbjct 524 AGAAAGCAAG-TTCTTCTTCTTC 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5