BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330970

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44300.1 | Symbols:  | Dormancy/auxin associated family prot...   577    3e-164


> AT5G44300.1 | Symbols:  | Dormancy/auxin associated family protein 
| chr5:17845166-17846197 REVERSE LENGTH=568
Length=568

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 334/345 (97%), Gaps = 0/345 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTGTACTTGAAAACCTATGGGATGACGTTGTGGCTGGTCCTCGACCTGAAGCCGGT  60
            |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct  19   ATGGGTGTACTTGAAAACCTTTGGGACGACGTTGTGGCTGGTCCTCGACCCGAAGCCGGT  78

Query  61   GGCCGTGGCCATCTCCGGCGAATCTCCACCGGTTTAACTAGCTTGAACAATACCACAGAA  120
            ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct  79   GGCCGTGGCCATCTCCGACGAATCTCCACCAGCTTAACTAGCTTGAACAATACCACAGAA  138

Query  121  GGAATGTCAGTGGCCGGATCGGTATCTCTTCCGGCGAGTCCGGCTACTCCGGTGACACCA  180
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  139  GGAATGTCAGTGGCCGGATCGGTATCTCTTCCAGCGAGTCCGGCTACTCCGGTGACACCA  198

Query  181  GGATCTGGTCGGAAAGTGGATGTGTGGAGGAGTGTATTTCATCTGGCAAGTAATGTGACC  240
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  199  GGATCTGGTCGGAAAGTGGATGTGTGGAGGAGTGTATTTCATCCGGCAAGTAATGTGACC  258

Query  241  ACAAGGGAGATTGGTGCTAATGTCTTTGACAAACCCTCTCATCCTAATTCTCCAACGGTT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  259  ACAAGGGAGATTGGTGCTAATGTCTTTGACAAACCCTCTCATCCTAATTCTCCTACGGTT  318

Query  301  TATGATTGGATGTATAGCAACGAGAGCAGGAGCAAGCACCGTTGA  345
            ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct  319  TATGACTGGATGTATAGCAACGAGACCAGGAGCAAGCACCGTTGA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5