BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330997
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05870.1 | Symbols: APC11 | anaphase-promoting complex/cyclo... 466 5e-131
> AT3G05870.1 | Symbols: APC11 | anaphase-promoting complex/cyclosome
11 | chr3:1753467-1755631 FORWARD LENGTH=592
Length=592
Score = 466 bits (252), Expect = 5e-131
Identities = 260/264 (98%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGTCAAGATCTTGCGTATCCTTTTATGGCATGCAGTTGCTTCATGGACATGGGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 ATGAAAGTCAAGATCTTGCGTATCCTTTTATGGCATGCAGTTGCTTCATGGACATGGGAT 98
Query 61 GCTCAAGACGAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 GCTCAAGACGAAACATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGC 158
Query 121 AAACTTCCTGGAGATGATTGCCCTCTAATTTGGGGAGCTTGCAATCACGCGTTTCATCTT 180
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 159 AAACTTCCTGGAGATGATTGCCCTCTAATTTGGGGAGCCTGCAACCACGCGTTTCATCTT 218
Query 181 CACTGTATATTGAAATGGGTGAATTCACAGACGAGTCAAGCTCATTGCCCAATGTGCAGA 240
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 219 CACTGTATATTGAAATGGGTGAATTCGCAGACGAGCCAAGCTCATTGCCCAATGTGCAGA 278
Query 241 AGAGAATGGCAGTTCAAAGAGTAA 264
||||||||||||||||||||||||
Sbjct 279 AGAGAATGGCAGTTCAAAGAGTAA 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12064259760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5