BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331018
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43870.1 | Symbols: | Plant protein of unknown function (DU... 2097 0.0
> AT5G43870.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr5:17632346-17635912
REVERSE LENGTH=1603
Length=1603
Score = 2097 bits (1135), Expect = 0.0
Identities = 1291/1367 (94%), Gaps = 7/1367 (1%)
Strand=Plus/Plus
Query 1 ATGGATCACAAAAGTAAAACGTTTGGAGAACAATGGTGGAGGTCAAATCCAGCGTTTAAA 60
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 50 ATGGATCAAAAAAGTAAAACGATTGGAGAACAATGGTGGAGGTCAAATCCAACGTTTAAA 109
Query 61 CCGCCTGAAACGCCGTTAGATTCTATGGAGTTTTTGTCACGTACTTGGAGTGCTTCCGCA 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CCGCCTGAAACGCCATTAGATTCTATGGAGTTTTTGTCACGTACTTGGAGTGCTTCCGCT 169
Query 121 ACTGAAGTTTCGAGAGCCGTCGTCGCCTCTCCTCCGACTTCTCAACCACCGCAAATGCGT 180
||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 170 ACTGAAGTTTCAAGAGCTGTCGTCGCGTCTCCACCGACTTCTCAACCGCCGCAAATGCGT 229
Query 181 TTCTCGGAGATCCAAAACGGTTCTTCTGATGTCACTTTGGTGCCGGAAGATGAAGACAAC 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 230 TTCTCGGAGATCCAAAACGGTTCTTCTGACGTCACTTTGGTGCCGGAAGATGAAGAAAAC 289
Query 241 GGCGTCGTTTC-TGGAAATACTTTTTCTTTTGCTTCTTCTGAGACTTCTTTAATGGTCAT 299
||| ||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 290 GGCATCG-TTCTTGGAAATACTTTTTCTTTTGCTTCTTCAGAAACTTCTTTAATGGTCAT 348
Query 300 GGAACGTATCATGGCTCAATCTCCGGAGATTTCATCGCCACGAACATCAGGGAGACTTTC 359
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 349 GGAACGTATCATGGCTCAGTCACCGGAGATTTCATCGCCACGAACATCAGGGAGACTTTC 408
Query 360 ACATAGCTCATTCACCGACAGTCCTCCGATCTCTCCCTCCGACATCGATGACTTTAAGCA 419
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 TCATAGCTCATTCACCGACAGTCCTCCGATCTCTCCCTCCGACATCGACGACTTTAAGCA 468
Query 420 ATTCTACCGTGTGAGCCCATCCTTTAATGGGCACATACGTGGTCCATCAGCCATTCCCGG 479
|||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||||
Sbjct 469 ATTCTACCGTGTGAGCCCTTCCTTTAACGGCCACATACGTGGTTCATCAGCCATTCCCGG 528
Query 480 TACTGTCGGACGGTCTAAAACTGTTGGCCGTTGGCTAAAGGACCGGCgagagaagaagag 539
|| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 529 CACCGCCGGAGGGTCTAAAACTGTTGGTCGTTGGCTAAAGGACCGGCGAGAGAAGAAGAG 588
Query 540 agaggagaCGCGCGCACAAAACGCACAGCTCCATGCAGCTGTATCTGTAGCTTGTGTGGC 599
||| |||||||| |||||||| |||||||| || || ||||||||||||||| | |||||
Sbjct 589 AGAAGAGACGCGTGCACAAAATGCACAGCTTCACGCGGCTGTATCTGTAGCTGGAGTGGC 648
Query 600 TGCCGCTGTGGCTGCTATTGCTGCAGCCACTGCCTCTCAGTCGAGTTCTGGAACCGATGA 659
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 649 TGCCGCGGTGGCTGCTATCGCTGCAGCCACTGCCTCTCAGTCGAGTTCTGGAACTGACGA 708
Query 660 GCATGTGGCCAAAAATGACTCCGCGGTGGCTTCTGCCGCGACTTTGGTGGCTGCGCAGTG 719
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 709 GCAAGTGGCCAAAAATGACTCCGCGGTGGCTTCTGCCGCGACTTTGGTGGCGGCGAAGTG 768
Query 720 TGTGGAGGCTGCAGAGATTATGGGAGCTGATCGTGAGCACTTGGCCTCCGTTGTTAGTTC 779
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TGTGGAAGCTGCAGAGATTATGGGAGCTGATCGTGAGCACTTGGCCTCCGTTGTTAGTTC 828
Query 780 TGCGGTTAACGTTCGTTCTGCCGGAGATATCATGACGTTAACCGCCGCTGCTGCCACAGC 839
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 829 TGCGGTTAACGTTCGTTCTGCCGGAGATATCATGACTTTGACCGCCGCTGCTGCCACAGC 888
Query 840 TTTGAGAGGAGCTGCGAC-ATTAAAGGCAAGAGCATTGAAAGAGGTATGGAACATTGCGG 898
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 889 TTTGAGAGGAGCTGC-ACAATTAAAGGCAAGAGCATTGAAGGAGGTATGGAACATTGCGG 947
Query 899 CTGTGATTCCCGTGGATAAGGGTATACCAAAAGGCGGTGGTGGTGGTGGTTATAGAGGAG 958
|||||||||| || |||||||||| |||||||||| |||||||||||||||||||| |
Sbjct 948 CTGTGATTCCTGTAGATAAGGGTACACCAAAAGGC---GGTGGTGGTGGTTATAGAGGTG 1004
Query 959 GCGAGTTAGCCCCCGAAGATAATTTTCTCGGGATTTGCAGTAGAGAATTGCTAGCTAAAG 1018
||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1005 GCGAGTTAGCCCCTGTAGATAATTTTCTTGGGATTTGCAGTAAAGAATTGCTAGCTAAAG 1064
Query 1019 GTTGCGAATTGCTCAAACGCACCCGCAAAGGTGATCTTCACTGGAAAGTTGTTTCGATCT 1078
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1065 GTTGCGAATTGCTTAAACGCACCCGCAAAGGTGATCTTCATTGGAAAGTTGTTTCGATCT 1124
Query 1079 ACATAAATAGAACAAAGCAGGTAATATTGAAGACTAAGAGCAAACATGTTGCTGGGACCA 1138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 ACATTAATAGAACAAAGCAGGTAATATTGAAGACTAAGAGCAAACATGTTGCTGGGACCA 1184
Query 1139 TTACAAAGAAGAAAAAGAATGTGGTGGTGGAATTGGTCAAGGGATTACCGGCGTGGCCTG 1198
| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1185 TCACAAAGAAGAAAAAGAATGTGGTGGTGGGATTGGTTAAGGGATTACCGGCGTGGCCTG 1244
Query 1199 GCCGGGAATTGCTCGAGGGCGGAGAGAATTTGAGGTATTTTGGACTAAAGACGCCGGAGA 1258
|||||||| |||||||||| |||||||||||||||||||| || || |||||| |||||
Sbjct 1245 GCCGGGAAATGCTCGAGGGTGGAGAGAATTTGAGGTATTTCGGGCTGAAGACGGTGGAGA 1304
Query 1259 AAAGAGTGATTGAATTCGAGTGCAAAAGCCAAAGGGAATATGATCTTTGGACACAAGGTG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AAAGAGTGATTGAATTCGAGTGCAAAAGCCAAAGGGAATATGATCTTTGGACACAAGGTG 1364
Query 1319 TTTCCATGCTTCTTTCCATTGCTTCTGATAGGAAACAGAAATGTTGA 1365
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1365 TTTCCATGCTTCTTTCCATTGCTTCTGATAGGAAACATAAATGTTGA 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5