BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331037
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43680.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1068 0.0
> AT5G43680.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17544029-17545752
FORWARD LENGTH=1142
Length=1142
Score = 1068 bits (578), Expect = 0.0
Identities = 697/752 (93%), Gaps = 17/752 (2%)
Strand=Plus/Plus
Query 1 ATGCTTGGGCTTTCTTACGGTGAGCTCTTACTCATCATCGGTGCCACAGCTGCTGTTGTA 60
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 46 ATGCTTGGGCTTTCTTACGGTGAGCTCTTACTCATCGTCGGCGCCACAGCTGCTCTTGTA 105
Query 61 GGACCCAAGGATCTTCCGATTATTGCTAGAGCAGGAGGAAGATTATTCGGACGAGCCATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 GGACCCAAGGATCTTCCGATTATTGCTAGAGCAGGAGGAAGATTATTCGGACGAGCCATT 165
Query 121 GGTTACATCAATATGGCTCGTGGTCACTTGGATGGTGTCATGAAACAACCTCAGATGCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 GGTTACATCAATATGGCTCGTGGTCACTTGGATGGTGTCATGAAACAACCTCAGATGCAA 225
Query 181 GAGATATCGAAAGAAGTTCAAGATTTACGAGCACAAGTAGACGCGATTAGCCATGGAGCT 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 226 GAGATATCGAAAGAAGTTCAAGATTTACGAGCACAAGTAGATGCGATTAGCCATGGAGCA 285
Query 241 AGGTTTTCTTTATTTGATTCTAGTCCTTTGACTCGAAGAGTAGACAACCAAA---CTCCA 297
|| |||||| ||||||||||||||||||||||||||||||| || ||||||| ||| |
Sbjct 286 AGATTTTCTCTATTTGATTCTAGTCCTTTGACTCGAAGAGTGGATAACCAAAAAACTCAA 345
Query 298 GAACCTAGTCCAAGCACCACCAATGGGAATGTTACATCGGTTAATGTTGAAGAAAGACAG 357
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct 346 GAACCTAGTCCAAGCACCACCAATGGGATTGTTACATCCGTTAATGTTGAAGAAAAACAG 405
Query 358 AAGCCTGTAGATCATTATACAAAGGCGCAAGAATTTAGTGGCTCGTCTTCGGGTTCGGTT 417
|||||||||||||||||||||||||| |||||||||||||||||||| || | ||| |||
Sbjct 406 AAGCCTGTAGATCATTATACAAAGGCTCAAGAATTTAGTGGCTCGTCGTCAGCTTCTGTT 465
Query 418 AACCTGCACGCTCAAGCAACATCATTTGCACGATTATCTGAGACGGTCAGTGGAAAAAC- 476
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 466 AACCTGCACGCTCAAGCAACATCATTTGCACGATTATCTGAGACAGTCAATGGAAAAACT 525
Query 477 CAACACTCTAATCAGCGATTCACCTGTTCTTCCTGTTTCAGCTGAGATGGCAAAGTTGCT 536
|| || ||||| ||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 526 CA-CAGTCTAAACAGTGATTCACCTGTTCTTCCAGTATCAGCTGAGATGGCAAAGTTGCT 584
Query 537 TCCTCAACGCAAAGAGAGTGCAAAAGGATCTGATTTAATGTTGGAGGCAGTTCTTGAAGC 596
||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 585 TCCTCAACGCAAAGAGAGTGCAAGAGGATCTGATTTAATGTTAGAGGCGGTTCTTGAAGC 644
Query 597 GGAAGTAGCACACAAGGCAAAAAGCTTTTTCGCACAAGCCGAAAAAGAAACTCCAGCTTT 656
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 645 GGAAGTAGCACACAAGGCGAAAAGCTTTTTCGCACAAGCCGAGAAAGAAACTCCAGCTTT 704
Query 657 AAAAGTGTTGCAGGGAAGTTTTTCAGTGACGGGAAAGGAGAAAGTTGAAGGCAA--GTTT 714
|||| | | | | ||||||||||||| |||||||||||| ||||| ||| ||||
Sbjct 705 GAAAG-G--G-A---A-GTTTTTCAGTGACAGGAAAGGAGAAAATTGAACTCAAAAGTTT 756
Query 715 TGGGGATCTTCTCTTCGATCACAAGACACCGG 746
|||||| | || | |||||||||||||||||
Sbjct 757 TGGGGACCATCA-T-CGATCACAAGACACCGG 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5