BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331043
Length=2280
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43630.1 | Symbols: TZP | zinc knuckle (CCHC-type) family pr... 2342 0.0
> AT5G43630.1 | Symbols: TZP | zinc knuckle (CCHC-type) family
protein | chr5:17526751-17530516 FORWARD LENGTH=2934
Length=2934
Score = 2342 bits (1268), Expect = 0.0
Identities = 1496/1605 (93%), Gaps = 19/1605 (1%)
Strand=Plus/Plus
Query 681 GCTGAAGCAAGATAGTTCCTTCATGAATTGGATATCAAACATGACAAAAGGGATCTGGAA 740
||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1017 GCTCAAGCAAGATAGTTCCTTCATGAATTGGATATCAAATATGACTAAAGGAATCTGGAA 1076
Query 741 AGGTAATGAAGAAGACGATTCTCCTTTTGCAGCTCTTACCACCACCTCAGATGCTAATGG 800
|||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1077 AGGTAATGAAGAAGACAATTCTCCTTTTGTAGCTCTTACCACCACCTCAAATGCTAATGG 1136
Query 801 TCATGGCCAAGTCAATGCAATCGTTGACCAACAACAATTGAGTCCATGCTGTGTGAAGGA 860
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCATGGCCAAGTCAATGCCATCGTTGACCAACAACAATTGAGTCCATGCTGTGTGAAGGA 1196
Query 861 AAATAGTGGATGCAGAAACACTGGTTTCCAGTCTTTTTTCCAGTCTATATATTGTCCGAA 920
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAATAGTGGATGCAGAAACACCGGTTTCCAGTCTTTTTTCCAGTCTATATATTGTCCGAA 1256
Query 921 GAAACGAAGTCAAGATGCCGTCGAGATGGATTTCCCGAATGATGCTAATGCTACTTCTTT 980
||||| ||||||||||| |||||| ||||||||||||||||||| ||||||| || ||||
Sbjct 1257 GAAACAAAGTCAAGATGTCGTCGACATGGATTTCCCGAATGATGTTAATGCTGCTCCTTT 1316
Query 981 GCAGGAACTTCCCTGGATTCCTGAACAATGTGACATTGCCAAAGGGGATGACTTGTCTTC 1040
||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1317 GCAGGAACTTCCCTGGATTCCTGAACATTGCGACATTTCCAAAGGGGATGACTTGTCTTC 1376
Query 1041 ATCTGGTAATGATATTGGTCCAGTGGCTGAACCCAACATTTCATCAGGAAAAGTTGGATT 1100
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1377 ATCTGGTAATGAGATTGGTCCAGTGGCTGAACCCAACATTTCATCAGGAAAAGTTGTATT 1436
Query 1101 TAATCAGAGAAGCGAAACACTCTCGTCAGAGAACAAACGTGAGGACAAAGAACCAAACAT 1160
|||||||| |||| |||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1437 TAATCAGACAAGCAAAACACAGTCTTCAGAGAACAAACGTGAGGACAAAGAGCCAAACAT 1496
Query 1161 CTCTTTGATGTCTCTTAGTAAGTCTAAGCCAAATGAAGAGCCAAAAATC-TGCGGTGAAG 1219
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1497 CTCGTTGATGTCTCTTAGTAAGTCTAAGCCAAATGAAGAGCCAAAAA-CATGCGGTGAAG 1555
Query 1220 CTGGTGGAAAGGTTAGTCCATGTTTAAACAACAGAAACTCTGGTCTTCAAAGTTTGTGGA 1279
||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1556 CTGATGGAAAGGTTAGTCCATGTTTAACCAACAGAAACTCTGGTCTTAAAAGTTTGTGGA 1615
Query 1280 TAAGCCGGTTTTCTTCTAAAAGTCCGTTCCCTCAGAAAAAGACCAGTGAAACGGCTAAAG 1339
| || ||||||||||||||| || ||||||||||||||||| | ||||||||||||||||
Sbjct 1616 TTAGTCGGTTTTCTTCTAAAGGTTCGTTCCCTCAGAAAAAGGCAAGTGAAACGGCTAAAG 1675
Query 1340 AGGTCAATGCTTCAGCCTCAGACACAGCTAAAACCCATGATTCGCAGAAAATGCTGGTAA 1399
||| ||||||||||||||||||| |||||||||||| |||||| | ||||||||||| |
Sbjct 1676 AGGCCAATGCTTCAGCCTCAGACGCAGCTAAAACCCGTGATTCACGGAAAATGCTGGCAG 1735
Query 1400 ATAATAATGTTGTAATACCCAGTATCAGCTCGGTAGATGGGCTCGATAAACCGAACACTG 1459
| || |||||| ||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1736 ACAAGAATGTTATAAGACCCAGTATCAGCTCGGTAGATGGGCCCGATAAACCGGACACTG 1795
Query 1460 TCCTTCCCATAGTTTCGTCAATGAGAATAGAGTCTTCAGAAGCAATGGCTTCTTTGTTTG 1519
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TCCTTCCTATAGTTTCGTCAATGAGAATAGAGTCTTCAGAAGCAATGGCTTCTTTGTTTG 1855
Query 1520 CTAGAAGGAT-AGAAGCAATGAAACA-CATCATACCCGCAGGTTCTTTAGCTGAGAATGC 1577
||||||| || ||||||||||||| | |||||| ||| ||||||||||||||||||||||
Sbjct 1856 CTAGAAG-ATTAGAAGCAATGAAA-AGCATCATGCCCTCAGGTTCTTTAGCTGAGAATGC 1913
Query 1578 AGAGGAGGAACAGCCAAATCTAATCTGTTTCTACTGCGGTAAAAAGGGTCATTGTTTACA 1637
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1914 AGAGGAGGAACAGAGGGATCTAATTTGTTTCTACTGCGGTAAAAAGGGTCATTGTTTACG 1973
Query 1638 GGATTGTTTGGAAGTAACTGATACTGAGCTCAGAGATCTAGTACAGAACATAAGT-TCTC 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1974 GGATTGTTTGGAAGTAACTGATACTGAGCTCAGAGATCTAGTACAGAACATAAGTGTG-C 2032
Query 1697 GGAATGGAAGAGAAGAAGCGTCAAGTCTATGCATTAGATGTTTTCAGCTAAGTCACTGGG 1756
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2033 GGAATGGAAGAGAAGAAGCGTCAAGTCTATGCATTAGATGTTTTCAGCTTAGTCACTGGG 2092
Query 1757 CTGCAACATGCCCGAATGGTCCACTGTATAGTTCAGGAGCTGAAGATAGAGCTATGAAGC 1816
|||||||||||||||||| ||| |||||| ||||||||||||||| |||||||||||||
Sbjct 2093 CTGCAACATGCCCGAATGCTCCCCTGTATGGTTCAGGAGCTGAAGGTAGAGCTATGAAGA 2152
Query 1817 ACACTTTAGCTTCTACCTCTGGCATGAAGCTGCCCGTAAGTGGTTTCACAGATGTACCAA 1876
|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 2153 ACGCTTTAGCTTCTACCTCTGGCATGAAGCTGCCCATAAGTGGTTTCACAGACGTACCAA 2212
Query 1877 AGGCGGTCTTTGAGGCTGTTCAAGTGCTTCGCCTCAGCCGCACAGACGTTCTCAAATGGA 1936
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2213 GGGCGGTCTTTGATGCTGTTCAAGTGCTTCGCCTGAGCCGCACAGACGTTCTCAAATGGA 2272
Query 1937 TAAACACCAAGAAGTCTTTATCGGGTCTCGAAGGGTTTTTCTTGCGGTTAAGGCTCGGGA 1996
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2273 TAAACACCAAGAAGTCTGTATCGGGTCTCGAAGGGTTCTTCTTGCGGTTAAGGCTCGGGA 2332
Query 1997 AATGGGAAGAAGGTCTTGGAGGAACAGGGTACTACGTAGCCCGCATAGATG---A----G 2049
||||||||||||| ||||||||||||||||| || ||||| |||||||||| | |
Sbjct 2333 AATGGGAAGAAGGGCTTGGAGGAACAGGGTATTATGTAGCTCGCATAGATGGGGACACAG 2392
Query 2050 -GG-ACAAAGCTCAAGGAGACATTCAGAGAAAAGCTCAATCTCAGTTAAGGTTAAAGGGG 2107
|| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 2393 AGGGACAAAGCTCAAGGAGACATTCAGAGAAAAGCTTAATTTCAGTTAAGGTTAAAGGTG 2452
Query 2108 TGACTTGCCTTGTTGAGTCTCAGTTTATCTCAAACCACGACTTTCTTGAGGAGGAGTTGA 2167
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2453 TGACTTGCCTTGTTGAGTCTCAGTTTATCTCAAACCAAGACTTTCTTGAGGAGGAGTTAA 2512
Query 2168 AGGCGTGGTGGCGGAGCGCGGGGAAAAGTGCC-GAAAGAAGCGGCTGCGAGGGCATCCCA 2226
|||| ||||||| ||||||||||||||||||| ||| |||||||| ||| ||||||||
Sbjct 2513 AGGCCTGGTGGCAGAGCGCGGGGAAAAGTGCCAGAAC-AAGCGGCTACGACGGCATCCCG 2571
Query 2227 TCGGCAGAGGAACTTAGTCGGAAAATTCAGCAGAGAAAGATGTTA 2271
||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2572 TCGGCGGAGGAACTTAGTCGGAAAATTCAGCAGAGAAAAATGTTA 2616
Score = 808 bits (437), Expect = 0.0
Identities = 616/695 (89%), Gaps = 42/695 (6%)
Strand=Plus/Plus
Query 1 ATGGGAGATGGAGATGAGCAAAGTAAAGAGTTAGAAGGACTCTCGTCTTCGAGTCGTC-- 58
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 130 ATGGGAGATGGAGATGAGCAAAGTAAAGAGTTAGGAGGAGTTTCGTCTTCGAGTCGTCGT 189
Query 59 -GTTCTTCGGGT-C--CTAGTTCTGCAAATGCAGAGGCAAGAATGAAGTTTGCTTCTGTT 114
||||||| ||| | || || ||||||||||||| |||||||||||||||||| |||||
Sbjct 190 TGTTCTTCCGGTACTGCTGGTGCTGCAAATGCAGAAGCAAGAATGAAGTTTGCTGCTGTT 249
Query 115 GATGCTATAACAGAATTAGTGTGGTCTCCTGGAAACGGTCTAAGCTTAAGATGTGCAGAT 174
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 250 GATGCTATAACAGAATTAGTGTGGTCTCCTAGCAACGGTCTAAGCTTAAGATGTGCAGAT 309
Query 175 ATCAGTTTCACGGGAAAAGCAAAATTAGTCTCTCCTAACTTCTTTGATATAGGACTAACC 234
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 310 ATCAGTTTCACGGGAAAGGCAAAATTACTCTCTCCTAACTTCTTTGATATAGGACTAACT 369
Query 235 AATATGGCGATTCATTCGAATAGTACAAGTATCGAACACC---AAG---A---AGATGTC 285
|| ||||||||||| || ||||| |||||||| ||| ||| ||| | |||||||
Sbjct 370 AACATGGCGATTCACTCAAATAGCACAAGTATTGAAGACCAAGAAGATCACGTAGATGTC 429
Query 286 GAATTGAGAAGCCGAGATCAAGTGAACCAAGAAAGGATTGGTGGTTCTGTTGAGGATATG 345
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 430 GAATTGAGAAACCGAGATCAAGTGAACCAAGCAATGATTGGTGGTTCTGTTGAGGATATG 489
Query 346 AAACCTGAAATGGTTGAGGATAAGGTTGAAACCAATGATGATATAAAGAATGAAGTAGCA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 490 AAACCTGAAATGGTTGAGGATAAGGTTGAAACCAATGATGATATAAAGAATGAAGAAGCA 549
Query 406 GGAAGTTCCAAAAGATCGTCAGATAGTCCGAAAGCTATGGAAGGAGAAACCAGAGACTTG 465
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GGATGTTCCAAAAGATCTTCAGATAGTCCGAAAGCTATGGAAGGAGAAACCAGAGACTTG 609
Query 466 TTGGTGAATGAACAGTTGAGGATGGAAAGTGCTGGATCTCAAGAAGGACCGACTAACCGT 525
||||| |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 610 TTGGTTAATGAACAGTTGAGGATGGAAAGTGCTGGATCTCAAGAAG-A---A------G- 658
Query 526 GGAGATAAAGATGAAGGGGATAAGGCGAATAATAGAATTGATCGTTTAGAATCAATGGAT 585
|| ||||| | | | |||| || || |||||||||||||||||||||||
Sbjct 659 GG-GATAA-G--GC-GC--ATAA------TAG-AG--TTGATCGTTTAGAATCAATGGAT 702
Query 586 GAGAATAACCTTGCAACTCTTGCTGTTGTAGCATGTGAAGGCAAAGGGGAATATTCACCG 645
||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 703 GAGAACAACCTCGCAACTCTTGCTGTTGTAGCATGTGAAGGTAAAGGGGACTATTTGCCG 762
Query 646 GAGAATGAGGCTGGACCTAGTGGTTCCTACAGGCG 680
||| ||||||||||||||||||||||||||||||
Sbjct 763 GAGGGTGAGGCTGGACCTAGTGGTTCCTACAGGCG 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113152028430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5