BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331045
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43590.1 | Symbols: | Acyl transferase/acyl hydrolase/lysop... 1796 0.0
> AT5G43590.1 | Symbols: | Acyl transferase/acyl hydrolase/lysophospholipase
superfamily protein | chr5:17509368-17511477
REVERSE LENGTH=1206
Length=1206
Score = 1796 bits (972), Expect = 0.0
Identities = 1125/1201 (94%), Gaps = 2/1201 (0%)
Strand=Plus/Plus
Query 17 TGTTCAAGAAAAATAAACCGCCGAAATACGGAGACCTTGTAACCATCCTCAGCCTCGACG 76
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2 TGTTCAAGAACAATAAACCGCCGAAATACGGAAACCTTGTAACCATCCTCAGCCTCGACG 61
Query 77 GCGGCGGAGTCCGTGGAATCATCGGGGGAGTCATCCTTGCTAATCTTGAAAAACATCTTC 136
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 62 GCGGCGGAGTCCGAGGAATCATTGGGGGAGTCATCCTTGCTAATCTTGAAAAACATCTTC 121
Query 137 AGGAAATTGATAAAGACGAAACCGTGAGGCTAGCCGATTATTTCGATGTGATAGCCGGGA 196
||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||| |
Sbjct 122 AGGAAATTGATAATGACGAAAGCGTGAGGCTAGCCGATTATTTTGACGTGATAGCCGGAA 181
Query 197 CCAGCACCGGTGGCCTCATGACGGCCATGTTGACTGCACCGAACCATTCCGGCCGGCCAC 256
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 182 CCAGCACCGGTGGCCTCATGACGGCCATGTTGACTGCGCCGAACGATTCCGGCCGGCCAC 241
Query 257 TCTATGCTGCCAAAGACATTGTCCCGTTTTACTTAGAAGAATCTCCTAAGATATTTTATG 316
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 242 TTTATGCTGCCAAAGACATTGTCCCGTTTTACTTAGAAGAATCTCCTAAAATATTTTATG 301
Query 317 GATCTAAATGGTGGAAACCGTCTATTTTATGG-CGTCTGTTTCGTCCAAAATACGACGGA 375
|||| ||||||||| | |||||| ||||||| | |||||||||||||| ||| |||||
Sbjct 302 GATCGAAATGGTGGGATCCGTCTGCTTTATGGGCA-CTGTTTCGTCCAAAGTACAACGGA 360
Query 376 GAGTATCTACATACACGATTGGGAGAGATTCTTGGAGAGACAAGACTTGATCAAACACTC 435
|||||||| |||||| ||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 361 GAGTATCTGCATACAAGATTGGGAGAGATTCTTGGAGAGACAAAACTTGACCAGACACTC 420
Query 436 ACAAACGTTGTCATACCTACCTTCGACATCAAGAAACTTCAACCAACCATCTTCTCCTCA 495
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 ACAAATGTTGTCATACCTACCTTCGACATCAAGAAACTTCAACCCACCATCTTCTCCTCA 480
Query 496 TACCATGCGTCGGTTGACCCTAGCATGAACGTCAAGTTATCAGACATATGCATTGGCACA 555
|||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 481 TACCATGCATCAGTTGACCCTAGTTTGAACGCCAAGTTATCAGACATATGCATTGGCACA 540
Query 556 TCAGCTGCTCCATATTACTTACCTCCTTATAAATTTCCCAAAAACGATAAGATGAGAACG 615
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 TCAGCTGCTCCATTTTACTTACCTCCTTATAAATTTCCCGAAAACGATAAGATGAGAACG 600
Query 616 TTTAACCTCATAGACGGTGGTGTTACCGCTAATGACCCGACTCTGGTGGGCATGACAGCT 675
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TTTAACCTCATAGACGGTGGTGTTACCGCTAATGACCCGACTCTGGTAGGCATGACAGCT 660
Query 676 ATGTCTAGAAAGTCTATAATTAACCATCCTGATATGGATGGGTTCAAGCCGTTAGAGTAT 735
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 661 ATGTCTAGAAAGTCTATAATCAAACATCCTGATATGGATGGGTTCAAGCCGTTAGAATAC 720
Query 736 GATAGGTATCTCGTGATATCGATAGGGACTGGATCGGCAAAAAGAGAGGAGTACTACAGC 795
|| | |||| |||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct 721 GAAAAGTATATCGTGATATCTATAGGGACAGGATCGGCGAAAAGGGAGGAGTACTACAGT 780
Query 796 GCAATAGAGGCTGCGAAATGGGGATTTGAAAATTGGGCGTTCAACTGGAAGCATAAAACG 855
||| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 781 GCAGTAGAGGCTGCAAAATGGGGATTCGAAAATTGGGCGTACAACTGGAAGCATAAAACA 840
Query 856 ACTCCGATATTAGACATTATCTTGGAATCAAGCCGGGACATGGTCCAGTACCACACCTCG 915
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 841 ACTCCGATATTAGACATTATCTTTGAATCAAGCCGAGACATGGTTCAGTACCACACCTCG 900
Query 916 GTTCTGTTTCAAGCCCTAAAGTCCGAGGATAACTACCTAAGAATCGACGCAGATACATTG 975
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 GTTCTGTTTCAAGCCCTAGAGTCCGAGGATAACTATCTAAGAATCGACGCAGATACATTG 960
Query 976 AAAAAGGATGAAGTCTTTATGGATGACGCAAAGACGTTGAACTTAGAGAATCTAAAGAAT 1035
||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||
Sbjct 961 AAAAAAGATGAAGTCTTTATGGATGACTCCGAGACGTTGAACTTAGAGAATTTAAAGAAT 1020
Query 1036 ATTGGAGAGAAATTACTAGACACAAATGTTGTGCGTATGAACCTCGACACTTATACATAT 1095
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1021 ATTGGAGAGAAATTACTGGACACAAATGTCATGCGTATGAACCTCGACACTTATACATAT 1080
Query 1096 GAACCTATTGATAAAACCGTCAACAATGATCAAGAACTCAAAAGGTTTGCCAAAATTCTC 1155
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 GAACCTATTCCTAAAACCGTCAACAATGATCAAGAACTCAAAAGGTTTGCGAAAATTCTC 1140
Query 1156 TCGGATGAAAAGAAATTAAGGAATGAGAGATTCAAGACCATGACTGATGATTCGTCAAAC 1215
||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||
Sbjct 1141 TCGGATGAAAAGAAATTAAGGAACAAGACATTTAAGACCATGATTGATGATTCGTCAAAC 1200
Query 1216 T 1216
|
Sbjct 1201 T 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5