BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331046
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43580.1 | Symbols: | Serine protease inhibitor, potato inh... 377 2e-104
> AT5G43580.1 | Symbols: | Serine protease inhibitor, potato inhibitor
I-type family protein | chr5:17507883-17508668 REVERSE
LENGTH=515
Length=515
Score = 377 bits (204), Expect = 2e-104
Identities = 214/219 (98%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAGCATATGCGAAGATCCAGGAAAAAGCTCATGGCCAGAGCTTTTGGGGGCAAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 ATGGCAAGCATATGCGAAGATCCAGGAAAAAGCTCATGGCCAGAGCTTTTGGGGGCAAAA 141
Query 61 GGAGAAGATGCAAAAGAAGTGATCGAAAGAGAGAATCCCAAAATGAAAGCAGTTATCATT 120
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 142 GGAGAAGATGCAAAAGAAGTGATCGAGAGAGAGAATCCAAAAATGAAAGCAGTTATCATT 201
Query 121 TTGGATGGAACAGCTGTTCCTGAGATCTTTATTTGCTCTCGTGTTTACGTTTGGGTCAAC 180
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 202 TTGGATGGAACAGTTGTTCCGGAGATCTTTATTTGCTCTCGTGTTTACGTTTGGGTCAAC 261
Query 181 GATTGCGGAATCGTTGTTCAAATTCCCATCATCGGTTAA 219
|||||||||||||||||||||||||| ||||||||||||
Sbjct 262 GATTGCGGAATCGTTGTTCAAATTCCTATCATCGGTTAA 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5