BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331067
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43285.1 | Symbols: | Putative membrane lipoprotein | chr5:... 244 2e-64
AT5G43513.1 | Symbols: | Putative membrane lipoprotein | chr5:... 213 7e-55
AT5G43510.2 | Symbols: | Putative membrane lipoprotein | chr5:... 211 2e-54
AT5G43525.1 | Symbols: | Putative membrane lipoprotein | chr5:... 206 1e-52
AT5G43516.1 | Symbols: | pseudogene of a defensin-like (DEFL) ... 202 1e-51
AT5G43518.1 | Symbols: | Putative membrane lipoprotein | chr5:... 200 5e-51
> AT5G43285.1 | Symbols: | Putative membrane lipoprotein | chr5:17370475-17370857
REVERSE LENGTH=285
Length=285
Score = 244 bits (132), Expect = 2e-64
Identities = 234/280 (84%), Gaps = 20/280 (7%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttt-tattttccactcttttaatttttgtttCTTCATGTGCATCAAT 59
|||||||||| ||||| |||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 1 ATGAAGTTGA-TTTTTATATTTTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAAT 59
Query 60 ACTTATAAAGGAATCTAGTGGAGAAGAGACAGCT-TATTATTTCAATCCGGCAGCAAGTC 118
|||||||||||||||||||| |||||||| | | ||| ||||||||| | ||||||||
Sbjct 60 ACTTATAAAGGAATCTAGTGAAGAAGAGAGA-ATATATCCTTTCAATCCAGTAGCAAGTC 118
Query 119 CTTTCGATCCATATTCATTGAACCAGAA-ACTTAAACAATATTGG----ATTGGTTATTG 173
||||||||||| |||| ||||||| || |||| || |||| || |||||||||||
Sbjct 119 CTTTCGATCCACGTTCACTGAACCA-AATACTT-AA-AATA--GGCAAAATTGGTTATTG 173
Query 174 TTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAA-TATATTAAG-AGATGTAATTTG 231
||||||||||||||||||||||||||||| | || | |||||| | | ||||| |||
Sbjct 174 TTTTGATTGCGCAAGAGCTTGTATGAGAA-GAGATAGGTATATTC-GCACATGTAGTTTT 231
Query 232 GAAAGACGTCTTTGTCGTTGCAGT-ATTAGTAAGATTCAT 270
|||||| ||||||||||||||| || ||| | ||||||
Sbjct 232 GAAAGAAAACTTTGTCGTTGCAGTTAT-AGTCATATTCAT 270
> AT5G43513.1 | Symbols: | Putative membrane lipoprotein | chr5:17477999-17478390
FORWARD LENGTH=297
Length=297
Score = 213 bits (115), Expect = 7e-55
Identities = 222/271 (82%), Gaps = 17/271 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatt-tt--ccactcttttaatttttgtttCTTCATGTGCATCA 57
||||||||| ||||| |||| || ||||| ||||||||||||||||||||| |||||
Sbjct 22 ATGAAGTTGCCTTTTATATTCTTAATTACTCTATTAATTTTTGTTTCTTCATGTACATCA 81
Query 58 ATACTTATAAAGGAATCTAGTGGA-GAAGAGACAGCTTATTATTTCAATCCGGCAGCAAG 116
||||||||||| ||||||||| || ||||||| | | |||| ||||| ||| || ||||
Sbjct 82 ATACTTATAAATGAATCTAGT-GATGAAGAGAGAACATATTCTTTCAGTCCAACAACAAG 140
Query 117 TCCTTTCGATCCATATTCA-TTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTAT 171
|||||| |||||| ||| || |||| || ||||| || ||| | | | ||||||||
Sbjct 141 TCCTTTTGATCCACGCTCACTT-AACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTAC 195
Query 172 TGTTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATTT 230
|||||||||||||||||||||||||||||| ||| || |||||| | | ||||| |||
Sbjct 196 TGTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTTT 254
Query 231 GGAAAGACGTCTTTGTCGTTGCAGTATTAGT 261
|||||| |||||||||||||||||||||
Sbjct 255 TGAAAGAAAACTTTGTCGTTGCAGTATTAGT 285
> AT5G43510.2 | Symbols: | Putative membrane lipoprotein | chr5:17474111-17474478
FORWARD LENGTH=273
Length=273
Score = 211 bits (114), Expect = 2e-54
Identities = 220/269 (82%), Gaps = 16/269 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatt-ttccactcttttaatttttgtttCTTCATGTGCATCAAT 59
||||||||| || || |||| || ||||| ||||||||||||||||||||| ||||||
Sbjct 1 ATGAAGTTGCCTATTATATTCTT-AACTCTATTAATTTTTGTTTCTTCATGTACATCAAC 59
Query 60 ACTTATAAA-GGAATCTAGTGGA-GAAGAGACAGCTTATTATTTCAATCCGGCAGCAAGT 117
||||||||| || ||||||| || ||||||| | | |||| ||||| ||| || |||||
Sbjct 60 ACTTATAAATGG-ATCTAGT-GATGAAGAGAGAACATATTCTTTCAGTCCAACAACAAGT 117
Query 118 CCTTTCGATCCATATTCATTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTATTG 173
||||| |||||| ||| |||||| || ||||| || ||| | | | |||||||| ||
Sbjct 118 CCTTTTGATCCACGCTCACTGAACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTACTG 173
Query 174 TTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATTTGG 232
|||||||||||||||||||||||||||| ||| || |||||| | | ||||| ||| |
Sbjct 174 TTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTTTTG 232
Query 233 AAAGACGTCTTTGTCGTTGCAGTATTAGT 261
||||| |||||||||||||||||||||
Sbjct 233 AAAGAAAACTTTGTCGTTGCAGTATTAGT 261
> AT5G43525.1 | Symbols: | Putative membrane lipoprotein | chr5:17488149-17488516
FORWARD LENGTH=273
Length=273
Score = 206 bits (111), Expect = 1e-52
Identities = 220/270 (81%), Gaps = 18/270 (7%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatt-ttccactcttttaatttttgtttCTTCATGTGCATCAAT 59
||||||||| || || |||| || ||||| ||||||||||||||||||||| ||||| |
Sbjct 1 ATGAAGTTGCCTATTATATTCTT-AACTCTATTAATTTTTGTTTCTTCATGTACATCAGT 59
Query 60 ACTTATAAA-GGAATCTAGTGGA-GAAGAGACAGCTTATTATTTCAATCC-GGCAGCAAG 116
||||||||| || ||||||| || ||||||| | | |||| ||||| ||| | ||||||
Sbjct 60 ACTTATAAATGG-ATCTAGT-GATGAAGAGAGAACATATTCTTTCAGTCCAAG-AGCAAG 116
Query 117 TCCTTTCGATCCATATTCATTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTATT 172
|||||| |||||| ||| |||||| || ||||| || ||| | | | |||||||| |
Sbjct 117 TCCTTTTGATCCACGCTCACTGAACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTACT 172
Query 173 GTTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATTTG 231
||||||||||||||||||||||||||||| ||| || |||||| | | ||||| |||
Sbjct 173 GTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTTTT 231
Query 232 GAAAGACGTCTTTGTCGTTGCAGTATTAGT 261
|||||| |||||||||| ||||||||||
Sbjct 232 GAAAGAAAACTTTGTCGTTACAGTATTAGT 261
> AT5G43516.1 | Symbols: | pseudogene of a defensin-like (DEFL)
family protein. | chr5:17482275-17482644 FORWARD LENGTH=275
Length=275
Score = 202 bits (109), Expect = 1e-51
Identities = 220/271 (81%), Gaps = 18/271 (7%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatt-tt--ccactcttttaatttttgtttCTTCATGTGCATCA 57
||||||||| | |||| ||| || ||||| ||||||||||||||||||||| |||||
Sbjct 1 ATGAAGTTG-CCTTTTAATTCTTAATTACTCTATTAATTTTTGTTTCTTCATGTACATCA 59
Query 58 ATACTTATAAAGGAATCTAGTGGA-GAAGAGACAGCT-TATTATTTCAATCCGGCAGCAA 115
||||||||||| ||||||||| || ||| ||| | | |||| ||||| ||| || |||
Sbjct 60 ATACTTATAAATGAATCTAGT-GATGAACAGAGA-ATATATTCTTTCAGTCCAACAACAA 117
Query 116 GTCCTTTCGATCCATATTCATTGAACC-AGAAACTTAAACAATAT-TG-G-ATTGGTTAT 171
||||||| |||||| ||| |||||| || ||||| || ||| | | | ||||||||
Sbjct 118 GTCCTTTTGATCCACGCTCACTGAACCAAG-AACTT-AA-AAT-TGGGAGAATTGGTTAC 173
Query 172 TGTTTTGATTGCGCAAGAGCTTGTATGAGAAAGGGAAAATATATTAAG-AGATGTAATTT 230
|||||||||||||||||||||||||||||| ||| || |||||| | | ||||| |||
Sbjct 174 TGTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTC-GTACATGTAGTTT 232
Query 231 GGAAAGACGTCTTTGTCGTTGCAGTATTAGT 261
|||||| |||||||||||||||||||||
Sbjct 233 CGAAAGAAAACTTTGTCGTTGCAGTATTAGT 263
> AT5G43518.1 | Symbols: | Putative membrane lipoprotein | chr5:17484366-17484852
FORWARD LENGTH=392
Length=392
Score = 200 bits (108), Expect = 5e-51
Identities = 201/244 (82%), Gaps = 14/244 (6%)
Strand=Plus/Plus
Query 25 actcttttaatttttgtttCTTCATGTGCATCAATACTTATAAAGGAATCTAGTGGA-GA 83
||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| || ||
Sbjct 93 ACTCTATTAATTTTTGTTTCTTCATGTACATCAATACTTATAAATGAATCTAGT-GATGA 151
Query 84 AGAGACAGCT-TATTATTTCAATCCGGCAGCAAGTCCTTTCGATCCATATTCATTGAACC 142
| ||| | | |||| ||||| ||| || |||||||||| |||||| ||| ||||||
Sbjct 152 ACAGAGA-ATATATTCTTTCAGTCCAACAACAAGTCCTTTTGATCCACGCTCACTGAACC 210
Query 143 -AGAAACTTAAACAATAT-TG-G-ATTGGTTATTGTTTTGATTGCGCAAGAGCTTGTATG 198
|| ||||| || ||| | | | |||||||| |||||||||||||||||||||||||||
Sbjct 211 AAG-AACTT-AA-AAT-TGGGAGAATTGGTTACTGTTTTGATTGCGCAAGAGCTTGTATG 266
Query 199 AGAAAGGGAAAATATATTAAG-AGATGTAATTTGGAAAGACGTCTTTGTCGTTGCAGTAT 257
||| ||| || |||||| | | ||||| ||| |||||| |||||||||||||||||
Sbjct 267 AGACGGGGTAAGTATATTC-GTACATGTAGTTTTGAAAGAAAACTTTGTCGTTGCAGTAT 325
Query 258 TAGT 261
||||
Sbjct 326 TAGT 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5