BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331076

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27490.1 | Symbols: ATCOAE | dephospho-CoA kinase family | c...   446    2e-124


> AT2G27490.1 | Symbols: ATCOAE | dephospho-CoA kinase family | 
chr2:11748015-11750182 REVERSE LENGTH=1061
Length=1061

 Score =  446 bits (241),  Expect = 2e-124
 Identities = 263/274 (96%), Gaps = 0/274 (0%)
 Strand=Plus/Plus

Query  423  ACTGATGGAGAGAGATGGATTGAGTGAGGAAGATGCAAGAAATAGAGTGATGGCTCAGAT  482
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  716  ACTGATGGAGAGAGATGGATTGAGTGAGGAAGATGCAAGAAACAGAGTGATGGCTCAGAT  775

Query  483  GCTTTTGGATTCGAAAAGAAGCAAAGCTGATGTTGTGATCGATAATAATGGCTCTCTCGA  542
            ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  776  GCCGTTGGATTCGAAAAGAAGCAAAGCTGATGTTGTGATCGATAATAATGGCTCTCTTGA  835

Query  543  CGACCTCCACCAACAGTTCGACAATGTTTTGTTTGAAATTAGAAAACCCTTGACGTGGAT  602
            |||||| |||||||||||||| || |||||| |||||||||||| ||| |||||||||||
Sbjct  836  CGACCTTCACCAACAGTTCGAGAAGGTTTTGATTGAAATTAGAAGACCATTGACGTGGAT  895

Query  603  CGAGTTTTGGCGTTCAAGGCAAGGAGCCTTCTCGGTCCTTGGTTCGGTGATTTTAGGATT  662
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  896  CGAGTTTTGGCGTTCAAGGCAAGGAGCCTTCTCGGTCCTTGGTTCAGTGATTTTAGGATT  955

Query  663  ATCTGTTTGCAAACAGCTCAAAATTGGCTCTTAA  696
            ||||||||||||||||||||||||||||||||||
Sbjct  956  ATCTGTTTGCAAACAGCTCAAAATTGGCTCTTAA  989


 Score =  390 bits (211),  Expect = 8e-108
 Identities = 237/250 (95%), Gaps = 0/250 (0%)
 Strand=Plus/Plus

Query  1    ATGAGAATAGTCGGGCTAACGGGAGGCATATCGTCTGGGAAGAGTACAGTCTCCAACCTC  60
            ||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||
Sbjct  291  ATGAGAATAGTCGGGTTAACGGGAGGCATAGCGTCTGGGAAGAGTACAGTGTCTAACCTC  350

Query  61   TTCAAGGCTAGTGGCATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAGATGTATTGAAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  TTCAAGGCTAGTGGCATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAGATGTATTGAAG  410

Query  121  AAAGGAAGCAGTGGATGGAAAAGAGTAGTTGCAGCTTTCGGGGAGGAGATTCTGCTTCCT  180
            ||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct  411  AAAGGAAGCGGTGGATGGAAAAGAGTCGTTGCAGCTTTTGGTGAGGAGATTCTGCTTCCT  470

Query  181  AGTAGAGAAGTGGATCGGCCGAAACTCGGTCAGATTGTGTTCTCATCTGATTCCAAACGC  240
            ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| || 
Sbjct  471  AGTGGAGAAGTGGATCGGCCAAAACTCGGTCAGATTGTGTTCTCGTCTGATTCCAAGCGT  530

Query  241  CAACTTCTAA  250
            ||||||||||
Sbjct  531  CAACTTCTAA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33707112637


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5