BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331078
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ... 713 0.0
> AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA
ligase | chr5:9695008-9697389 FORWARD LENGTH=1670
Length=1670
Score = 713 bits (386), Expect = 0.0
Identities = 647/768 (84%), Gaps = 38/768 (5%)
Strand=Plus/Plus
Query 533 TAACCTTCTT-AACAAAGAAAGGTTTCACATGTA-TACAACCTAATTTTCTT-ATGAGGA 589
|||| ||||| || ||||| ||| |||||| | | | |||||| |||| || |||||||
Sbjct 642 TAACTTTCTTGAA-AAAGAGAGGATTCACA-GGATTGCAACCTCCTTTT-TTCATGAGGA 698
Query 590 AGGAGGTCATGGAAAAGTGCGCACAATTGTCGCAATTTGATGAAGAACTATACAAGGTGA 649
|||| || |||| ||||||||||||||| | || || |||||||| || ||||||||||
Sbjct 699 AGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGGTGA 758
Query 650 TTGGTGAAGGAGATCATGATGAGAAATACCTTATTGCAACTTCTGAGCAACCTCTTTGTG 709
||||||| | | | ||||| |||||||| ||||||||| ||||||| ||||||||||
Sbjct 759 CTGGTGAA-G-G---A-GATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTGTG 812
Query 710 CTTACCATCA-AAATGAATGGATCCAACCTAGTGAGCTTCCCATAAGATATGCAGGTTAC 768
| |||||| | |||||||||| || || | |||||||||| |||||||||| ||||||
Sbjct 813 CGTACCAT-ATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTAC 871
Query 769 TCGA-CTTGCTTTCGAAAAGAAGCCGGTTCCCATGGAAGAGATACACTTGGCATTTTCCA 827
|| | | |||||| |||||||||||||||| ||||||||||| || ||||| |||||||
Sbjct 872 TC-ATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTTCCG 930
Query 828 TGTTCATCAGTTTGAGAAAGTTGAACAGTTTTGCATCACAAGTCCTAA--TG-AT---TC 881
|||||| |||||||||||| ||||||||||||||||||| | ||||| | || ||
Sbjct 931 TGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTC 990
Query 882 TTGGGAAATGCTCGATGAGATGATGAAGAACTCAGAAGATTTTTACCAATCGCTTAAAA- 940
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 991 GTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGCT-AAAAC 1049
Query 941 TTCCATACCGAGTTGTGTCGGAT-GTCTCTGGAGCTTTGAACAATGCAGCTGCTAAAAAG 999
||||||||| | | || ||| || ||||||||||| ||||| |||||||||| ||||||
Sbjct 1050 TTCCATACCAAATCGTCTCG-ATCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAAAAG 1108
Query 1000 TATGACTTGGAAGGATGGTTTCCTTCGTCAGAGAC-TTATAGAGAGCTTGTGTCCTGTTC 1058
|| || ||||||| |||||||||||||| ||||| || || ||||||||||| |||||
Sbjct 1109 TACGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATTC-AGGGAGCTTGTGTCTTGTTC 1167
Query 1059 CAACTGTACAGACTATCAGTCTCGAAGGCTTCG-GATCAGATACGGTCATAAAAAGAGCA 1117
||||||||||||||| ||| |||| |||||| | ||||||||||||||| ||||||||||
Sbjct 1168 CAACTGTACAGACTACCAGGCTCGCAGGCTT-GAGATCAGATACGGTCAGAAAAAGAGCA 1226
Query 1118 ATGATCAGCAGACTAAGAACAAGTATGTCCATATGCTGAATTCGACCCTTACCGCGACAC 1177
|||| |||||| ||| || |||||| ||||||||||||||||| ||||| || |||
Sbjct 1227 ATGA---GCAGACAAAG--CA-GTATGTGCATATGCTGAATTCGACACTTACTGCAACAG 1280
Query 1178 AGAGGACTATTTGTTGTATTCTTGAGAACTACCAGCGAGAGGATGGTGTGGACATCCCTG 1237
||||||| ||||| || ||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1281 AGAGGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTG 1340
Query 1238 AGGTTCTTCAACC-TTTCATGGGGGGAGTGACGTTTTTGCCTTTCAAG 1284
||||||| || || ||| ||||| |||| |||||||||||||||||||
Sbjct 1341 AGGTTCTGCAGCCGTTT-ATGGGCGGAGAGACGTTTTTGCCTTTCAAG 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5