BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331106
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42940.1 | Symbols: | RING/U-box superfamily protein | chr5... 3221 0.0
> AT5G42940.1 | Symbols: | RING/U-box superfamily protein | chr5:17216330-17220490
REVERSE LENGTH=2611
Length=2611
Score = 3221 bits (1744), Expect = 0.0
Identities = 1976/2082 (95%), Gaps = 39/2082 (2%)
Strand=Plus/Plus
Query 1 ATGCAGGGGGAGAGGGCCAGTCTTGGTTATTTATCAGAGGCCTTGAACTTTGAGCATGGT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 217 ATGCAGGGGGAGAGGGCCAGTCTTGGCTATTTATCAGAGGCCTTGAACTTTGAGCATGGT 276
Query 61 TCTTCTTCGAGTAATGGTGTGATAGATCATTGGGAGAATATTCACAGTCTTGGTGATAAT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TCTTCTTCAAGTAATGGTGTGATAGATCATTGGGAGAATATTCACAGTCTTGGTGATAAT 336
Query 121 GACTTGCAAGATTACATGATTGCAAATTCTGAATCAAATACTTCGCTTGCAAACTCAGTT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GACTTGCAGGATTACATGATTGCAAATTCTGAATCAAATACTTCGCTTGCAAACTCAGTT 396
Query 181 TATTGCGAGCAACAGGGTTTACACAGATTTAGCCTCGGTGAGGCTAGCTCTAGTGGCACG 240
||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 397 TATCACGAGCAACAGGGTTTACGCAGATTTAGCCTTGGTGAGGCTAGCTCTAGTGGCACG 456
Query 241 AAAGATGAAGCTTCCAGTCACAATGAGCAACGAATGGAAACTAGATGCTTTGACGGACGA 300
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 457 AAGGATGAAGCTTCCAGTCACAATGAGCAACGAATGGAAACAAGATGCTTTGACGGACGA 516
Query 301 AGAAATGAAATAATTGATTTAGACCCAGTGTTTGCGCAGCCATCAGGCACAAATCAACCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GGAAATGAAATAATTGATTTAGACCCAGTGTTTGCGCAGCCATCAGGCACAAATCAACCT 576
Query 361 GTTCAGAGTGTCAATCTGAATGCAGAATATATAGAAATTCACGAGGATATTAATCCATAT 420
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 577 GTTCAGAATGTCAATCTGAATGCAGAGTATATAGAAATTCACGAGGATATTAATCCATAT 636
Query 421 AGGGGTCGGTCTGGCTTCTTAGAAGCTAATGGACCAGGGACCAGGGTTTCACAACCTGGC 480
|| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 637 AGAGGTCGGTCTGGCTTCATAGAAGCTAATGGACCAGGGACCAGGGTCTCACAACCTGGC 696
Query 481 CGATCTTTTGAAGAGACCAGTGTTGGAACAGGTTCTTCTGTAGAGGGACGACGTGCATCC 540
||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 697 AGATCTTTTGAAGAGAACGGTGTTGGAACAGGTTCTTCTGTAGAGGGACGTCGTGCATCC 756
Query 541 TGCAAGAGAAAAGCTCTTGAAGGCAGTATTGGTCAATCTTCTTCAGGAGGTTATCGTGAT 600
||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 757 TGCAAAAGAAAAGCTCTTGAAGGCAGTATTAGTCAATCTTCTTCAGGAGGTTATCATGAT 816
Query 601 TTCCAGCGTGGAGAAAGCAGTTCATGGACCCCAGGTTCTACGGTTTATAGGCCAGGAAAT 660
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 817 TTCCAGCGTGGAGAAAGCAGTTCGTGGACCCCAGGTTCTACGGTTTTTAGGCCAGGAAAT 876
Query 661 GGTTTAAACATATCTAGCTCCCTTGACAATGGACCAAGAGGACTGGTCTCC-G----GT- 714
||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||
Sbjct 877 GGTTTAAACATATCTGGCTCCCTTGACAATGGACCAAGAGGAATGGTCTCCGGTACTGTA 936
Query 715 ----A----CC-G----T--ACCAAATTTTCCTGTTTCTGCCATTGCAGAGAGCTCCAGT 759
| || | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CCAAATTTTCCTGTTTCTGCACCAAATTTTCCTGTTTCTGCCATTGCAGAGAGCTCCAGT 996
Query 760 AGAAATATATGCGTCAGGAGTAATCCCTCAGATCATCAAGAAACTGTAAACCCAGCTACC 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 997 AGAAATATATGCGTCAGGAGTAATCCCTCAGATCATCAAGAAACTGTAAACCCATCTACC 1056
Query 820 TTTTCCGCGGGAACTGTTGTCAGGCGACCTGTCCCTCCATCCCAGTTGAACTTATCAAGA 879
||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1057 TTTGCTGCGGGAACTGTTGTCAGGCGGCCTGTCCCTCCATCCCAGTTGAACTTGTCAAGA 1116
Query 880 GTCTTACCAGCAGATCATCATTCATTGGACTTGAGACCTGGACAGTCTTTTGTCTTTTCT 939
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1117 CACTTACCAGCAGATCAGCATTCATTGGACTTGAGACCTGGACAGTCTTTTGTCGTTTCT 1176
Query 940 CGTACCCCAAATGCTACTGCTGTGAGCATACCACCTGTTTCAAGGACTATGCTACCACCA 999
|||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1177 CGTAACCCAAATTCTACTCCTGTGAGCATACCACCTGGTTCAAGGACTATGCTACCACCA 1236
Query 1000 TTTCGGTGGACTGAGG-GATCACTAGCGGGTGGAACATCGAACTCTACTGCGCCCGTTGA 1058
||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1237 TTTCGGTGGACTG-GGAGCTCACTAGTGGGTGGAACATCGAACTCTACTGCGCCCGTTGA 1295
Query 1059 GAGAAATCTTCATCTAGATGAAACCAGATCAAGAAGCATACCCGGGAATACTCTAGAGAT 1118
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1296 GAGAAATCTTCATCTAGATGAAACCAGGTCAAGAAGCATACCCGGGAATACTCTTGAGAT 1355
Query 1119 TCCCATGTTTGCAGCTCCTGAACTCGGAAATTTTGCCCGTAGTCAGAGTAGCAGAAATGT 1178
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1356 TCCCATGTTTGCAGCTCCTGAGGTAGGAAATTTTGCCCGTAGTCAGAGTAGCAGAAATGT 1415
Query 1179 AACAAATGGAAACCTGAATATTGCATCATCAGTGTCCAGGACAGGCTCAACAACAAGTGT 1238
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1416 AACAAATGGAAACCTGAATAGTGCATCATCAGTGTCCAGGACAGGCTCAACAACAAGTGT 1475
Query 1239 T------CCACCACCACCATCTTCTAATCTAGCGTGGACTTCTTACCAGAATTCACCACA 1292
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 TCCACCACCACCACCACCATCTTCTAATCTAGCGTGGACTTCTTACCAGAATTCACCACA 1535
Query 1293 TTATCAAAGAAGAAGGACTGAGAGGTCTGAACTTGTC-CGTAGGTCCTTGCTTTCTTCCC 1351
||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 1536 TTATCAAAGAAGAAGGACTGAAAGGTCTGAACTTG-CACGTAGGTCCTTGCTTTCTTCCC 1594
Query 1352 TTGCAGGAGATGCTACAAACCAGAGATCAGGTGATCATCCAACACTTCGTTCGGTGGCCC 1411
|||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1595 TTGCAGCAGATGCTACAAACCAGAGATCTGGTGATCATCCAACACTTCGTTCGTTGGCCC 1654
Query 1412 CTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATAGTCAGATGCATA 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 CTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATAGTCAGATGCATA 1714
Query 1472 ATCGGGCTTACTCGAGAGCAGGTCC-TTGGTTTGATAGGCAAGGGGATACTGTGGTTGGT 1530
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1715 ATCGGGCTTACTCGAGAGCAGGTCCGTT-GTTTGATAGGCAAGGGGATAGTGTGGTTGGT 1773
Query 1531 ATTCCTCATTCTTTGCGGGCCTTGGCAGCTGCAAGCAGAGGAAGAAGCAGACTTATGGTG 1590
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 ATTCCTCATCCTTTGCGGGCCTTGGCAGCTGCAAGCAGAGGAAGAAGCAGACTTATGGTG 1833
Query 1591 TCCCAGATGCAGAATGTCTTGGATGTCATGCGTAGGGAGGGTAATAATAAC---TTGCGG 1647
|||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||
Sbjct 1834 TCCCAGATGCAGAATGTCTTGGATGTCATGCGTAGGGATGCTAATAATAACAACTTGCGG 1893
Query 1648 CTTGAGGACGTTATGCTTCTAAATCAGTCAGTACTGTTTGATGGGGCTGCTGGTATTCAT 1707
|||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||
Sbjct 1894 CTTGAGGACGTTATGCTTCTAAATCACTCAGTACTATTTGATGGGGCTACTGGT---CAT 1950
Query 1708 GACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTCATATGAGGAATTGTTGGCA 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1951 GACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTCATATGAGGAATTGTTGGCA 2010
Query 1768 CTAGAAGAGCGGATTGGAGATGTATGTACCGGTGTAAACGAGGAAACCATATCAAACCGG 1827
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2011 CTAGAAGAGCGGATTGGAGATGTTTGTACCGGTGTAAACGAGGAAACCATATCAAACCGG 2070
Query 1828 TTAAAGCAACGAAAATACAAAAGCAACACAAAATCTCCACAAGATACAGAGCCATGCTGT 1887
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2071 TTAAAGCAACGAAAATACAAAAGCAACACAAAATCTCCACAAGATGCAGAGCCATGCTGT 2130
Query 1888 ATTTGTCAGGAGGAATACACTGAAGGAGAAGACATGGGGACACTAGAATGTGGGCACGAA 1947
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2131 GTTTGTCAGGAGGAATACACCGAAGGAGAAGACATGGGGACACTAGAATGTGGGCATGAA 2190
Query 1948 TTCCATAGCCAATGCATAAAAGAATGGCTGAAACAGAAGAATCTGTGCCCAATCTGCAAG 2007
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2191 TTCCATAGCCAATGCATTAAAGAATGGCTGAAACAGAAGAATCTTTGCCCAATCTGCAAG 2250
Query 2008 ACAACAGGCTTGAACACCGCGAAGAAGCGGAGGATAGGATGA 2049
|| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2251 ACTACAGGCTTGAACACCGCGAAGAAGCGGAGGATAGCATGA 2292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101555702535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5