BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331106 Length=2049 Score E Sequences producing significant alignments: (Bits) Value AT5G42940.1 | Symbols: | RING/U-box superfamily protein | chr5... 3221 0.0 > AT5G42940.1 | Symbols: | RING/U-box superfamily protein | chr5:17216330-17220490 REVERSE LENGTH=2611 Length=2611 Score = 3221 bits (1744), Expect = 0.0 Identities = 1976/2082 (95%), Gaps = 39/2082 (2%) Strand=Plus/Plus Query 1 ATGCAGGGGGAGAGGGCCAGTCTTGGTTATTTATCAGAGGCCTTGAACTTTGAGCATGGT 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 217 ATGCAGGGGGAGAGGGCCAGTCTTGGCTATTTATCAGAGGCCTTGAACTTTGAGCATGGT 276 Query 61 TCTTCTTCGAGTAATGGTGTGATAGATCATTGGGAGAATATTCACAGTCTTGGTGATAAT 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 TCTTCTTCAAGTAATGGTGTGATAGATCATTGGGAGAATATTCACAGTCTTGGTGATAAT 336 Query 121 GACTTGCAAGATTACATGATTGCAAATTCTGAATCAAATACTTCGCTTGCAAACTCAGTT 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 GACTTGCAGGATTACATGATTGCAAATTCTGAATCAAATACTTCGCTTGCAAACTCAGTT 396 Query 181 TATTGCGAGCAACAGGGTTTACACAGATTTAGCCTCGGTGAGGCTAGCTCTAGTGGCACG 240 ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 397 TATCACGAGCAACAGGGTTTACGCAGATTTAGCCTTGGTGAGGCTAGCTCTAGTGGCACG 456 Query 241 AAAGATGAAGCTTCCAGTCACAATGAGCAACGAATGGAAACTAGATGCTTTGACGGACGA 300 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 457 AAGGATGAAGCTTCCAGTCACAATGAGCAACGAATGGAAACAAGATGCTTTGACGGACGA 516 Query 301 AGAAATGAAATAATTGATTTAGACCCAGTGTTTGCGCAGCCATCAGGCACAAATCAACCT 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 GGAAATGAAATAATTGATTTAGACCCAGTGTTTGCGCAGCCATCAGGCACAAATCAACCT 576 Query 361 GTTCAGAGTGTCAATCTGAATGCAGAATATATAGAAATTCACGAGGATATTAATCCATAT 420 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 577 GTTCAGAATGTCAATCTGAATGCAGAGTATATAGAAATTCACGAGGATATTAATCCATAT 636 Query 421 AGGGGTCGGTCTGGCTTCTTAGAAGCTAATGGACCAGGGACCAGGGTTTCACAACCTGGC 480 || ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 637 AGAGGTCGGTCTGGCTTCATAGAAGCTAATGGACCAGGGACCAGGGTCTCACAACCTGGC 696 Query 481 CGATCTTTTGAAGAGACCAGTGTTGGAACAGGTTCTTCTGTAGAGGGACGACGTGCATCC 540 ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| Sbjct 697 AGATCTTTTGAAGAGAACGGTGTTGGAACAGGTTCTTCTGTAGAGGGACGTCGTGCATCC 756 Query 541 TGCAAGAGAAAAGCTCTTGAAGGCAGTATTGGTCAATCTTCTTCAGGAGGTTATCGTGAT 600 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 757 TGCAAAAGAAAAGCTCTTGAAGGCAGTATTAGTCAATCTTCTTCAGGAGGTTATCATGAT 816 Query 601 TTCCAGCGTGGAGAAAGCAGTTCATGGACCCCAGGTTCTACGGTTTATAGGCCAGGAAAT 660 ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 817 TTCCAGCGTGGAGAAAGCAGTTCGTGGACCCCAGGTTCTACGGTTTTTAGGCCAGGAAAT 876 Query 661 GGTTTAAACATATCTAGCTCCCTTGACAATGGACCAAGAGGACTGGTCTCC-G----GT- 714 ||||||||||||||| |||||||||||||||||||||||||| |||||||| | || Sbjct 877 GGTTTAAACATATCTGGCTCCCTTGACAATGGACCAAGAGGAATGGTCTCCGGTACTGTA 936 Query 715 ----A----CC-G----T--ACCAAATTTTCCTGTTTCTGCCATTGCAGAGAGCTCCAGT 759 | || | | |||||||||||||||||||||||||||||||||||||||| Sbjct 937 CCAAATTTTCCTGTTTCTGCACCAAATTTTCCTGTTTCTGCCATTGCAGAGAGCTCCAGT 996 Query 760 AGAAATATATGCGTCAGGAGTAATCCCTCAGATCATCAAGAAACTGTAAACCCAGCTACC 819 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 997 AGAAATATATGCGTCAGGAGTAATCCCTCAGATCATCAAGAAACTGTAAACCCATCTACC 1056 Query 820 TTTTCCGCGGGAACTGTTGTCAGGCGACCTGTCCCTCCATCCCAGTTGAACTTATCAAGA 879 ||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1057 TTTGCTGCGGGAACTGTTGTCAGGCGGCCTGTCCCTCCATCCCAGTTGAACTTGTCAAGA 1116 Query 880 GTCTTACCAGCAGATCATCATTCATTGGACTTGAGACCTGGACAGTCTTTTGTCTTTTCT 939 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 1117 CACTTACCAGCAGATCAGCATTCATTGGACTTGAGACCTGGACAGTCTTTTGTCGTTTCT 1176 Query 940 CGTACCCCAAATGCTACTGCTGTGAGCATACCACCTGTTTCAAGGACTATGCTACCACCA 999 |||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 1177 CGTAACCCAAATTCTACTCCTGTGAGCATACCACCTGGTTCAAGGACTATGCTACCACCA 1236 Query 1000 TTTCGGTGGACTGAGG-GATCACTAGCGGGTGGAACATCGAACTCTACTGCGCCCGTTGA 1058 ||||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||| Sbjct 1237 TTTCGGTGGACTG-GGAGCTCACTAGTGGGTGGAACATCGAACTCTACTGCGCCCGTTGA 1295 Query 1059 GAGAAATCTTCATCTAGATGAAACCAGATCAAGAAGCATACCCGGGAATACTCTAGAGAT 1118 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1296 GAGAAATCTTCATCTAGATGAAACCAGGTCAAGAAGCATACCCGGGAATACTCTTGAGAT 1355 Query 1119 TCCCATGTTTGCAGCTCCTGAACTCGGAAATTTTGCCCGTAGTCAGAGTAGCAGAAATGT 1178 ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1356 TCCCATGTTTGCAGCTCCTGAGGTAGGAAATTTTGCCCGTAGTCAGAGTAGCAGAAATGT 1415 Query 1179 AACAAATGGAAACCTGAATATTGCATCATCAGTGTCCAGGACAGGCTCAACAACAAGTGT 1238 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1416 AACAAATGGAAACCTGAATAGTGCATCATCAGTGTCCAGGACAGGCTCAACAACAAGTGT 1475 Query 1239 T------CCACCACCACCATCTTCTAATCTAGCGTGGACTTCTTACCAGAATTCACCACA 1292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1476 TCCACCACCACCACCACCATCTTCTAATCTAGCGTGGACTTCTTACCAGAATTCACCACA 1535 Query 1293 TTATCAAAGAAGAAGGACTGAGAGGTCTGAACTTGTC-CGTAGGTCCTTGCTTTCTTCCC 1351 ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| Sbjct 1536 TTATCAAAGAAGAAGGACTGAAAGGTCTGAACTTG-CACGTAGGTCCTTGCTTTCTTCCC 1594 Query 1352 TTGCAGGAGATGCTACAAACCAGAGATCAGGTGATCATCCAACACTTCGTTCGGTGGCCC 1411 |||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1595 TTGCAGCAGATGCTACAAACCAGAGATCTGGTGATCATCCAACACTTCGTTCGTTGGCCC 1654 Query 1412 CTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATAGTCAGATGCATA 1471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1655 CTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATAGTCAGATGCATA 1714 Query 1472 ATCGGGCTTACTCGAGAGCAGGTCC-TTGGTTTGATAGGCAAGGGGATACTGTGGTTGGT 1530 ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| Sbjct 1715 ATCGGGCTTACTCGAGAGCAGGTCCGTT-GTTTGATAGGCAAGGGGATAGTGTGGTTGGT 1773 Query 1531 ATTCCTCATTCTTTGCGGGCCTTGGCAGCTGCAAGCAGAGGAAGAAGCAGACTTATGGTG 1590 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1774 ATTCCTCATCCTTTGCGGGCCTTGGCAGCTGCAAGCAGAGGAAGAAGCAGACTTATGGTG 1833 Query 1591 TCCCAGATGCAGAATGTCTTGGATGTCATGCGTAGGGAGGGTAATAATAAC---TTGCGG 1647 |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| Sbjct 1834 TCCCAGATGCAGAATGTCTTGGATGTCATGCGTAGGGATGCTAATAATAACAACTTGCGG 1893 Query 1648 CTTGAGGACGTTATGCTTCTAAATCAGTCAGTACTGTTTGATGGGGCTGCTGGTATTCAT 1707 |||||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||| Sbjct 1894 CTTGAGGACGTTATGCTTCTAAATCACTCAGTACTATTTGATGGGGCTACTGGT---CAT 1950 Query 1708 GACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTCATATGAGGAATTGTTGGCA 1767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1951 GACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTCATATGAGGAATTGTTGGCA 2010 Query 1768 CTAGAAGAGCGGATTGGAGATGTATGTACCGGTGTAAACGAGGAAACCATATCAAACCGG 1827 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2011 CTAGAAGAGCGGATTGGAGATGTTTGTACCGGTGTAAACGAGGAAACCATATCAAACCGG 2070 Query 1828 TTAAAGCAACGAAAATACAAAAGCAACACAAAATCTCCACAAGATACAGAGCCATGCTGT 1887 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2071 TTAAAGCAACGAAAATACAAAAGCAACACAAAATCTCCACAAGATGCAGAGCCATGCTGT 2130 Query 1888 ATTTGTCAGGAGGAATACACTGAAGGAGAAGACATGGGGACACTAGAATGTGGGCACGAA 1947 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 2131 GTTTGTCAGGAGGAATACACCGAAGGAGAAGACATGGGGACACTAGAATGTGGGCATGAA 2190 Query 1948 TTCCATAGCCAATGCATAAAAGAATGGCTGAAACAGAAGAATCTGTGCCCAATCTGCAAG 2007 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 2191 TTCCATAGCCAATGCATTAAAGAATGGCTGAAACAGAAGAATCTTTGCCCAATCTGCAAG 2250 Query 2008 ACAACAGGCTTGAACACCGCGAAGAAGCGGAGGATAGGATGA 2049 || |||||||||||||||||||||||||||||||||| |||| Sbjct 2251 ACTACAGGCTTGAACACCGCGAAGAAGCGGAGGATAGCATGA 2292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101555702535 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5