BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331112
Length=2280
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42880.1 | Symbols: | Plant protein of unknown function (DU... 3197 0.0
> AT5G42880.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr5:17191577-17194131 FORWARD LENGTH=2364
Length=2364
Score = 3197 bits (1731), Expect = 0.0
Identities = 2105/2284 (92%), Gaps = 32/2284 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGGCGATGACAAAGATTCAGACGACCTTAATTTATTTCTCAATGCCATTGGTGAA 60
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 69 ATGTTGGGCGATGATAAAGATTCAGACGACCTTAATTTATTTCTCAACGCCATTGGTGAA 128
Query 61 ACTGGAGATGAACAAGGTCCAACGAGAATCTCCACGTCTTTCAATGATATAGACTTCTTG 120
|||| |||| || | || | | || | |||||||||||||| || |||||||||
Sbjct 129 GCTGGTGATG---AA-G---AA-G-G--TC-CAACGTCTTTCAATGACATCGACTTCTTG 176
Query 121 ACATTCGACGATGATGATTTACATAATCCATTTCAAGATTGTGATTCAAGTCCAATCAAC 180
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 177 ACATTCGACGATGAAGATTTACATAATCCATTTCAAGATTGTGAGACAAGTCCTATCAAC 236
Query 181 GAACCTTCTAGGGTTTATGTTGCACCAAGGGTGATGATAAGTCATCAAGATTCGTTTTCT 240
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAACCTCCTAAGGTTTATGTTGCACCAAGGGTGATGATAAGTCATCAAGATTCGTTTTCT 296
Query 241 GAAGATTCAAGAATCGATGTTATTGAAGATGCTAGGATTTTGCCTGCTTCCCCTCGTCTT 300
||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 297 GAAGATTCAAGAACCGATGTTATCGAAGATGCTAGGATTTTGCCTGCTTCTCCTCGTCTT 356
Query 301 AGAGTTCCTGCTTCTCCTCGAGCTTTTGTGTATCCAAGATCTGTTGAATCGCCTCGTTTC 360
||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct 357 AGAGTTCCTGCTTCTCCTCGAGCATTTGTGTATCCGAGATCTGTCGAATCACCTCGTTTT 416
Query 361 GGTTCTCCGAGATCTGTCGAATCACCTAGTTTCGGGTCTCCTATTGGTGTTATCGATACA 420
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 417 GGTTCTCCGAGATCTGTCGAATCGCCTTGTTTCGGGTCTCCGATTGGTGTTATCGATACA 476
Query 421 GCTTCGCCTTTCGAATCGGTTAAAGAAGCAGTTTCTAAGTTTGGTGGGATCACAGATTGG 480
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 477 GCTTCACCTTTCGAATCGGTTAGAGAAGCAGTTTCTAAGTTTGGTGGGATCACAGATTGG 536
Query 481 AAAGCTCATAAGATTCAGACAATAGAGAGACGGAAGATGGTAGATGAAGAGCTTGAGAAG 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAAGCTCATAAGATTCAGACTATAGAGAGACGGAAGATGGTAGATGAAGAGCTTGAGAAG 596
Query 541 ATACAAGAAGCAATGCCTGAGTTCAAGAGAGAAGCTGAGTTAGCTGAAGAGGCGAAACAC 600
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 597 ATACAAGAAGCAATGCCTGAGTACAAGAGAGAAGCTGAGTTAGCTGAAGAAGCGAAATAC 656
Query 601 GATGCGTTGAAGGAGCTAGAGAACACAAAGGGACTGATTGAGGAGCTAAAACTCGAGTTG 660
||||||||| ||||| ||||||||||||||||||| || |||||||| ||||| || |||
Sbjct 657 GATGCGTTGGAGGAGTTAGAGAACACAAAGGGACTCATCGAGGAGCTGAAACTAGAATTG 716
Query 661 GAGAAAGCAGAAAAGGAAGAGCAACAGGCGAAACAGGACTCGGATCTTGCGCAGATGCGT 720
|||||||| ||||||||||||||||| ||||||||||| || || || ||||||||||||
Sbjct 717 GAGAAAGCGGAAAAGGAAGAGCAACAAGCGAAACAGGATTCAGAGCTGGCGCAGATGCGT 776
Query 721 GTGGAAGAGATGGCGAGAGGTGTAGCTAATGAGGCAAGTGTTGCTGTTAAAGCACAGCTC 780
|| || ||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 GTTGAGGAGATGGAGAAAGGTGTAGCTAATGAGGCAAGTGTTGCTGTTAAAACACAGCTC 836
Query 781 GAGGTAGCGAAAGCGAGGCAAGTCTCGGCTACTTGTGAGCTACGGTCTGTGAGAGAAGAG 840
|||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct 837 GAGGTAGCTAAAGCGAGGCAAGTCTCGGCTACTTCTGAGTTACGGTCTGTTAGAGAAGAG 896
Query 841 ATTGAAATGGTTAGTAATGAATATGAAGATATGTTGAGGGAAAAAGAATTAGCT-AAGGA 899
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 897 ATTGAAATGGTTAGTAATGAATATAAAGATATGTTGAGGGAAAAAGAATTAGCTGCA-GA 955
Query 900 GAGAGCTGATATTGCTGTTATGGAAGCTAAAGAGATTGAGAGAACAATGGATGGTTTGAG 959
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 956 GAGAGCTGATATTGCTGTTTTGGAAGCTAAAGAGATTGAGAGAACGATGGATGGTTTGAG 1015
Query 960 TATAGAGCTGATTGCCACCAAGGAGTTGTTGGAATCTGTGCACACGGCTCATCTCGAAGC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TATAGAGCTGATTGCCACCAAGGAGTTGTTGGAATCTGTGCACACGGCTCATCTCGAAGC 1075
Query 1020 GGAAGAGAAGAGATTCAGTGTGGCAATGGCTCGGGACCAAGATGTTTACAACTGGGAAAA 1079
||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||
Sbjct 1076 GGAAGAGAAGAGATTCAGTGTAGCAATGGCTAGGGACCAAGATGTTTATAATTGGGAAAA 1135
Query 1080 GGAATTGAAGATGGTGGAAAATGATATCGAGAGGCTTAACCAAGAAGTTCGTGCGGCTGG 1139
||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1136 GGAATTGAAGATGGTCGAAAATGATATTGAGAGGCTTAACCAAGAGGTTCGTGCGGCTGA 1195
Query 1140 TGATGTGAAAACAAAGCTAGATACTGCTTCTGCTCTTCAGCATGATTTGAAGGCTGAATT 1199
|||||||||| | |||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 1196 TGATGTGAAAGCTAAGCTAGAGACTGCTTCTGCTCTTCAGCATGATTTGAAGACCGAATT 1255
Query 1200 AGCGGCTTTCACAGAAA-ATGCAAGCGGTGATCTGTTGACGGAAAAGAAGAGTAATAATG 1258
|||||||||||| || | || |||||||| |||||||| ||||||||| | |
Sbjct 1256 AGCGGCTTTCACGGATATAT-CAAGCGGTAATCTGTTGTTGGAAAAGAA---T------G 1305
Query 1259 ACATACATGCGGCTGTTGATTCTGCGAGAAGAGAGCTTGAAGAAGTCAAAGCCAACATTG 1318
|||| ||||| || ||||| |||||||| ||||| || |||||||| ||||||||||| |
Sbjct 1306 ACATTCATGCTGCGGTTGAGTCTGCGAGGAGAGAACTCGAAGAAGTAAAAGCCAACATAG 1365
Query 1319 AAAAAGCAGCTTCAGAGGTGAAAACATTGAAGATAATTGCTGGATCATTACAGTCCGAGC 1378
| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||
Sbjct 1366 AGAAAGCAGCTTCAGAGGTGAAAAAATTGAAGATAATAGCTGGTTCATTACAGTCTGAGC 1425
Query 1379 TTGGAAGAGAGAGACAGGATCTAGCAGAAACTAAGCAGAGAGGAACTGTGGGTTCGGTTC 1438
|||||||||||||||||||||||| |||||||||||| | || || | ||||| || |
Sbjct 1426 TTGGAAGAGAGAGACAGGATCTAGAAGAAACTAAGCAAAAAGAAAGTACGGGTTTGGCCC 1485
Query 1439 AGACAAAGGGTAAAGAATCAAGAGAGGAGTTAGAGGATACAGCAAAGAAGTTGGAGCAGG 1498
|||||| | |||||| || |||||||||| | || ||||| ||||||||||||||||
Sbjct 1486 GGACAAACGATAAAGACGCAGGAGAGGAGTTGGTTGAAACAGCCAAGAAGTTGGAGCAGG 1545
Query 1499 CGACGAAAGAGGCAGAGGATGCAAAGGCATTTGCTACAGCTGCTAGAGACGAGCTTCGAA 1558
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 1546 CGACGAAAGAGGCAGAGGATGCAAAGGCATTGGCTACAGCTTCTAGAGACGAGCTTAGAA 1605
Query 1559 TGGCGAAGGAATTGTCTGAGCAAGCGAAAAGAGGAATGTCTACGATAGAGAGTAGGTTAA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1606 TGGCGAAGGAATTGTCTGAGCAAGCGAAAAGAGGAATGTCTACGATAGAGAGTCGGTTAG 1665
Query 1619 CT-GAGGCGAAAAAGGAAATGGAGGCTGCTAGGGCTTCAGAGAAGTTAGCCTTGGCTGCT 1677
| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1666 -TAGAGGCGAAAAAGGAAATGGAGGCTGCTCGGGCGTCAGAGAAGTTAGCCTTGGCTGCT 1724
Query 1678 ATAAAAGCTTTACAAGAGACTGAATCTTCTCAGAGATTCGAGGAGATTAATAATTCACCA 1737
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 ATAAAAGCTCTGCAAGAGACTGAATCTTCTCAGAGATTCGAGGAGATTAATAATTCACCA 1784
Query 1738 AGAAGCATCATAATCTCTGTAGAGGAATACTACGAGCTAAGCAAGCAGGCACACGAGTCC 1797
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1785 AGAAGCATTATAATCTCTGTAGAGGAATACTACGAGCTAAGCAAGCAGGCACTCGAGTCT 1844
Query 1798 GAGGAGGAGGCAAACACAAGACTATCAGAGATTGTCTCCCAAATAGAGGTGGCTAAAGAG 1857
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1845 GAGGAGGAGGCAAACACAAGACTATCAGAGATTGTCTCTCAAATAGAGGTGGCGAAAGAG 1904
Query 1858 GAAGAGTCAAGAATCTTGGAGAAACTAGAGGAAGTGAATAGGGAAATGAGCCTAAGAAAA 1917
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1905 GAAGAGTCAAGAATCTTGGAGAAACTAGAGGAAGTGAATAGAGAAATGAGTGTAAGAAAA 1964
Query 1918 GAAGAGCTTAAAGAGGCTAATGGAAAAGCCGAGAATGCTAGAGACGGGAAGTTGGGTATG 1977
| |||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct 1965 GCAGAGCTTAAAGAGGCTAATGGAAAAGCCGAAAAGGCTAGAGATGGGAAGTTGGGAATG 2024
Query 1978 GAGCAAGAGTTAAGAAAATGGAGATCAGAAAATGGGAAAAGGAGAACAGACGAAAGCAGG 2037
||||||||| | ||||||||||| || ||||||||||| ||||||||||||||| ||||
Sbjct 2025 GAGCAAGAGCTGAGAAAATGGAGGTCGGAAAATGGGAAGAGGAGAACAGACGAAGGCAGA 2084
Query 2038 GAGCCTAAGAAAAGTCCGACGAGGTCAAGCACCGAGGGGAGAAATAAGGAGAACGGACTT 2097
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 2085 GAGCCTGAGAAAAGTCCGACGAGGTCAAGCACCGAGGGGAGAAACAAGGAGAATGGA-TT 2143
Query 2098 -GGGCAGTCAAAATCGTTTGCATTTGGTGATCAAGGAAGCAGCAGCAACTACACTGGAGG 2156
|||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 2144 CGGGCAGTCGAAATCGTTTGCATTTGGTGAACAAGGAAGCAGCAGCAACAACACTGGAGG 2203
Query 2157 AGGTACTACTACTACTACCAATAATAATCTGACTCCTGAAACAaagaagaagaagaagaa 2216
| |||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 2204 AAGTACTACTACTAATA--A-TAATAATCTGACTCCTGAAACAAAGAAGAAGAAGAAGAA 2260
Query 2217 gCTTTCTTTGTTTCCAAAAGTTTTCATGTTCTTGTCAAGAAAGAAGTCTCACAGTCGCAA 2276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2261 GCTTTCTTTGTTTCCAAAAGTTTTCATGTTCTTGTCAAGAAAGAAGTCTCACAGTCACAA 2320
Query 2277 GTGA 2280
||||
Sbjct 2321 GTGA 2324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113152028430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5