BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331123
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42770.2 | Symbols: | Maf-like protein | chr5:17151988-1715... 732 0.0
> AT5G42770.2 | Symbols: | Maf-like protein | chr5:17151988-17154522
FORWARD LENGTH=1028
Length=1028
Score = 732 bits (396), Expect = 0.0
Identities = 431/448 (96%), Gaps = 2/448 (0%)
Strand=Plus/Plus
Query 175 GCTGAAGCAATCATGCAGCAGATCGCTGATGGTGATAACATAGAGGAGGATAAGTCGACC 234
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 415 GCTGAAGCAATCATGCAGCGGATCCCTGATGGTGAAAACATAGAGGAGGATAAGTCGACC 474
Query 235 TTACTTATTACTTGCGACCAAGTGGTCGTCTATGAAGATGCTGTCAGAGAGAAACCCTCG 294
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 475 TTACTTATTACTTGTGACCAAGTGGTTGTCTATGAAGATGCTGTTAGAGAGAAACCCTCG 534
Query 295 AGTGTCGAAGAAGCAAGGGAGTACATAAGAGGCTATTCCAAGGGGCACACAGCAACAGTG 354
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 AGTGTCGAAGAAGCAAGGGAGTACATAAGAGGCTATTCCAAGGGGCATACAGCAACAGTG 594
Query 355 AGTTCTGTGGCTGTGACAAATCTCAAAACAGGAGTCAGAAAAGGAGGCGTCGATAGAGTG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AGTTCTGTGGCTGTGACAAATCTCAAAACAGGAGTCAGAAAAGGAGGCGTCGATAGAGTG 654
Query 415 GAGATCTATTTCAATGAAATACCGGAAGAGACTATCGAGAAACTGATTGAGGAAGGCATG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAGATCTATTTCAATGAAATACCGGAAGAGACTATCGAGAAACTGATTGAGGAAGGCATG 714
Query 475 GTGCTTAAGGTAGCTGGTGCACTCCTAATCGAACATCCTCTTATACT-GCCGTGTGTTAA 533
||||||||||| |||||||||||||||||||| ||||| || || || ||| || |||||
Sbjct 715 GTGCTTAAGGTGGCTGGTGCACTCCTAATCGAGCATCCGCTAAT-CTTGCCATGCGTTAA 773
Query 534 GGAAGTGGTTGGGACAACAGATAGTGTGATGGGTCTGCCCAAAGAATTGACTGAGAAACT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGAAGTGGTTGGGACAACAGATAGTGTGATGGGTCTGCCCAAAGAATTGACTGAGAAACT 833
Query 594 TCTAAAGGAAGTATTGGCAAGCACATAG 621
||||||||||||||||||||||||||
Sbjct 834 GATAAAGGAAGTATTGGCAAGCACATAG 861
Score = 287 bits (155), Expect = 9e-77
Identities = 171/179 (96%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCGAATCAACCTCACTTCAAGCTAATTTTGGGATCTTCTTCGATTGCTCGACGT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 ATGGAATCGAATCATCCTCACTTCAAGCTAATTTTGGGATCTTCTTCGATTGCTCGACGT 219
Query 61 CAGATTTTAACAGACATGGGATACCAATTCACTCTCATGAGTGCTGATATTGATGAGAAA 120
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 AAGATACTAACAGATATGGGATACCAATTCACTCTCATGAGTGCTGATATTGATGAGAAA 279
Query 121 AGCATTCGTAAGGAGAAACCTGAAGAGTTGGTTTTGGCTTTAGCTGTGGCAAAGGCTGA 179
||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 280 AGCATCCGCAAGGAGAAACCTGAAGAGTTGGTTTTGGCTTTAGCTGAGGCAAAGGCTGA 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5