BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331130
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42700.1 | Symbols: | AP2/B3-like transcriptional factor fa... 915 0.0
> AT5G42700.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:17122171-17124353 FORWARD LENGTH=812
Length=812
Score = 915 bits (495), Expect = 0.0
Identities = 593/640 (93%), Gaps = 8/640 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGTCTCAAAGCAATCAAAATACGAAGAATTTCGTTTGAAAAGAGTGGAAGAGAAC 60
||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTCGAAAAACAAACAAAGTACGAAGAATTTCGTTTGAAAAGAGTGGAAGAGAAC 60
Query 61 AAGAAACGAATGGAAGCTCTCAATCTTCAAAAACTCTCTCAAAATCTCAATTCCACTTCC 120
|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 61 AAGAAACGAATGGAAGCTCTGAATCTTCCAAAACTCTCTCAAATTCTCAATTCCACTTCC 120
Query 121 GTCAAAAATTCTCCGATGAAGAAGAGATCTATTCCTCGAACACCAGAGAAGCAGATGGTT 180
||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GTCAAGATTTCTCCGATGAAGAAGAGATCTATTCCTCGAACACCAGAGAAGAAGATGGTT 180
Query 181 GATG-TACAACGAATTCAGATACGGAGAAGGGG-GTTGAGTAA-AAGGAGAGATTTGTCG 237
|||| || ||||| | || |||| ||||||||| | || | || || ||||||||| | |
Sbjct 181 GATGTTA-AACGAGTGCACATACAGAGAAGGGGAG-TGGGCAAGAA-GAGAGATTTATTG 237
Query 238 AATCGAGTTTATGTTTCTGAAGAAATCAGAGAAGAGG-CATTTTCAAGAGCTGAGAAATT 296
|||||||||||||||||||||||||||||||| |||| || ||||||||||| | |||||
Sbjct 238 AATCGAGTTTATGTTTCTGAAGAAATCAGAGATGAGGCCA-TTTCAAGAGCTAACAAATT 296
Query 297 CCAGGATGAATTGGGGAGTGGTCACCCAAGTTTTGTGAAATCTATGCTTCAATCACATGT 356
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 297 TCAGGATGAATTGGGGAGTGGTTATCCAAGTTTTGTGAAATCTATGCTTCAATCACATGT 356
Query 357 TTCTGGTGGCTTCTGGCTGGGACTTCCAGTTCAATTCTGTAGATCTCACCTCGGGAAACA 416
||||||||||||||||||||| |||||||| ||||| || | ||||||||||||| |||
Sbjct 357 TTCTGGTGGCTTCTGGCTGGGTCTTCCAGTGCAATTTTGCAAATCTCACCTCGGGTTACA 416
Query 417 AGATGGTGTCATAACTTTGATAGATGAAGAAGGCGAGGAGTATGAGACTATCTACTTAGC 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGATGGTGTCATAACTTTGATAGATGAAGAAGGCGAGGAGTATGAGACTATCTACTTAGC 476
Query 477 GAGAAAGAATGGACTTAGTGGTGGATGGATGGGGTTTGCTATTGCTCACAATCTAGCATA 536
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 477 GAGAAAGAATGGACTTAGTGGTGGATGGATGGGATTTGCGGTTGCTCACAATCTAGCATA 536
Query 537 TGGGGATACTCTTGTTTTCGAGTTAGTTCGTCGTACCGCTTTCAAGATTTACATTACAAG 596
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 537 TGGGGATACTCTTGTTTTCGAGTTAGTTCGTCGTACCGCTTTCAAGGTTTACATTACAAG 596
Query 597 AGTTGGAAGTTCTGGAGAAAGCTCAAAAGATATGAGCTGA 636
||||||||||| |||||||||||| |||||||||||||||
Sbjct 597 AGTTGGAAGTTGTGGAGAAAGCTCCAAAGATATGAGCTGA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5