BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331132
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42690.2 | Symbols: | Protein of unknown function, DUF547 |... 2296 0.0
> AT5G42690.2 | Symbols: | Protein of unknown function, DUF547
| chr5:17116428-17119838 REVERSE LENGTH=2102
Length=2102
Score = 2296 bits (1243), Expect = 0.0
Identities = 1494/1616 (92%), Gaps = 13/1616 (1%)
Strand=Plus/Plus
Query 16 agcagtagcagtagtaatagtagtagtagcTATACAAGATGCGTTAAAACTCCATCATCT 75
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 293 AGCAGTAGCAGTAGTAATGGTAGTAGTAGTTATACAAGATGCGTTAAAACTCCATCATCT 352
Query 76 GCAATTACGGAA-ATTGGGAAGAATGTGAAAGCTGGTGAAAATGGTGTTGGAAACCGAAA 134
||| ||| || ||||||||||| |||||| | ||||||||||||||| ||| |||||
Sbjct 353 ACAAATAC-TAACATTGGGAAGAAACTGAAAGGTTGTGAAAATGGTGTTGTAAATCGAAA 411
Query 135 GGCCTTAAATCGAGAGAAGATAATTGCTCTGCAACAAGATGTTGAGAAGCTAAGGAAGAA 194
||| ||||||||||||||||||||| |||||||| |||||||||| ||| | || |||||
Sbjct 412 GGCGTTAAATCGAGAGAAGATAATTACTCTGCAAGAAGATGTTGAAAAGTTGAGAAAGAA 471
Query 195 GCTTAGACTTGAAGAGAACATTCGCCGAGCAATGGAAAGAGCATTTAATAGACCTCTCGG 254
||| ||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||| ||
Sbjct 472 GCTGAGACTTGAAGAAAACATTCACCGAGCAATGGAAAGAGCATTTAGTAGGCCTCTTGG 531
Query 255 AGCACTTCCCCGCCTTCCTCCGTTTCTCCCTCCATCGATTTTGGAGTTACTTGCGGAAGT 314
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 532 AGCACTTCCCCGTCTTCCTCCGTTTCTACCTCCATCGGTTTTGGAGTTACTTGCGGAAGT 591
Query 315 GGCTGTTATGGAGGAAGAAATGGTTCGGTTAGAAGAATATATTGTCCATTGTAGACAAGA 374
||||||| |||| || ||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 592 GGCTGTTTTGGAAGAGGAATTGGTTCGGTTAGAAGAACATATTGTGCATTGTAGACAAGA 651
Query 375 ATTGTATCAAGAAACAGCTTTTACATCTTCATCCATAGCGAACTTAAAATGCTCTGCTG- 433
||||||||||||| ||| ||||||||||||||| |||| ||| |||||||||||| |||
Sbjct 652 ATTGTATCAAGAAGCAGTTTTTACATCTTCATCGATAGAGAATTTAAAATGCTCTCCTGC 711
Query 434 ATTTGCCTAAGAATTGGCAGAGCAAATCTAAGTCAGCTGCCAGTAATGCTAGAGAATCTG 493
|||| |||||| ||||||||| |||||| ||||||||| ||| || |||||||||||| |
Sbjct 712 ATTT-CCTAAGCATTGGCAGACCAAATCCAAGTCAGCTTCCACTAGTGCTAGAGAATCAG 770
Query 494 AATCACCTCGTTT-GCGGGAACCGCGTTCTGTTTCAGAGAGTCGGAGGGGTAAAGAGAAC 552
||||||||| ||| |||| ||| |||||||||||| | || ||| ||||||||| |||
Sbjct 771 AATCACCTC-TTTCACGGGCACCTTGTTCTGTTTCAGTGTGTAGGAAGGGTAAAGAAAAC 829
Query 553 AAGTTGAGTGCTACTTCTATCAAAACGCCGATAAAGAAAATGACTATTTTGGCTCATACA 612
|||||||||||||||||||||||||| ||||| ||||||| ||||| || |||||||||
Sbjct 830 AAGTTGAGTGCTACTTCTATCAAAACACCGATGAAGAAAACGACTA--TT-GCTCATACA 886
Query 613 CAACTTAATAAGAGTTTAGAAGCTCAGAAACTTGAGCAGGAAAGTCATAGATGTCGCAAA 672
||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 887 CAACTGAATAAGAGTTTAGAAGCTCAAAAACTAAAGCAGGATAGTCATAGATGTCGCAAA 946
Query 673 ACAAATGCAGAGCGGAGCTCTCATGGTGGGGGTGATGACCCAAATAAAATTTCCGAGGAT 732
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 947 ACAAATGCAGAGCGGAGCTCTCATGGTGGCGGTGATGAACCAAATAAAATTTCCGAGGAT 1006
Query 733 TTGGTTAAATGTTTGTCTAACATTTTCATGAGAATGAGCTCAATAAAGAGATCCGCGGTT 792
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1007 TTGGTTAAATGTCTGTCTAACATTTTCATGAGAATGAGCTCAATAAAGAGATCCATGGTT 1066
Query 793 ACGAAATCTCAAGAAAACGATAAAGATACGGCATTCAGGGACCCTTATGGAATTTGCTCC 852
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1067 ACAAAATCTCAAGAAAACGATAAAGATACGGCATTCAGGGATCCTTATGGAATTTGCTCT 1126
Query 853 AGCTTTAGTAGAAGAGATATTGGTCCTTATAAGAATTTCAGTGATGTTGAAGCAGCTTCA 912
|| ||||| ||||| |||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 1127 AGTTTTAGAAGAAGGGATATTGGTCGATATAAGAATTTCAGTGATGTTGAAGAAGCCTCA 1186
Query 913 GTAAATCAAAATAGAACGTCAAGTTCCTCTTTGTTTCTCATCCGTCAACTGAAACG-TCT 971
| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1187 CTTAACCAAAACAGAACGTCAAGTTCCTCTTTGTTTCTCATCCGCCAACTGAAACGAT-T 1245
Query 972 GCTTGGAAAACTTTCTTCAGTCAACTTGCAGAAACTTAATCAACAAGAGAAGTTAGCTTT 1031
|||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1246 GCTTGGAAGACTTTCTTTAGTCAACATGCAGAAACTTAATCAACAAGAGAAGTTAGCTTT 1305
Query 1032 CTGGATAAACATTTATAACAGCTGCATGATGAATTGTTTCCTTGAACATGGAATACCGGA 1091
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1306 CTGGATAAACATTTATAACAGCTGCATGATGAATGGTTTCCTTGAACATGGAATACCGGA 1365
Query 1092 GAGCCCTGATATGGTGACACTAACGCAAAAGGCGACTATAAATGTGGGAGGCCACTTTCT 1151
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1366 GAGCCCTGATATGGTGACATTAATGCAAAAGGCGACTATAAATGTAGGAGGCCACTTTCT 1425
Query 1152 CAATGCAAGCACAATCGAACACTTCATCCTCCGCTTACCGTATCACTCAAAATATATTTC 1211
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1426 CAATGCAATCACGATCGAACACTTCATCCTCCGCTTACCGCATCACTCAAAATATATTTC 1485
Query 1212 TCCAAAGGGATCAAAGAAAAATGAAATGGCAGTGAGTAGTAAATTTGGATTGGAATTGTC 1271
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1486 TCCAAAGGGTTCAAAGAAAAATGAAATGGCAGTGAGAAGTAAATTTGGATTGGAATTGTC 1545
Query 1272 AGAGCCACTTGTAACATTTGCTCTCTCATGTGGTACCTGGTCCTCACCCGCGGTAAGGGT 1331
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1546 AGAGCCACTTGTAACATTTGCTCTCTCATGTGGTAGCTGGTCCTCACCCGCGGTACGGGT 1605
Query 1332 GTACACTGCGAGTAAAGTAGAGGAGGAGTTGGAGGTGGCAAAAAGAGAGTACCTAGAAGC 1391
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1606 GTACACTGCGAGTAAAGTAGAGGAGGAGTTGGAGGTGGCGAAAAGAGAGTACCTAGAAGC 1665
Query 1392 ATCCGTGGGGATATCCGTGGCGAAAATGGGGATACCGAAA-CTGATGGATTGGTATAGTC 1450
||| ||||||||||| |||| |||||| |||||||| ||| |||||||||||||||||||
Sbjct 1666 ATCGGTGGGGATATCGGTGGTGAAAATAGGGATACC-AAAGCTGATGGATTGGTATAGTC 1724
Query 1451 ATGACTTTGCAAAGGACATTGAATCATTACTTGATTGGATTTGCCTTCAGTTGCCTACTG 1510
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1725 ATGACTTTGCAAAGGACATTGAATCATTGCTTGATTGGATTTTCCTTCAGTTGCCTACTG 1784
Query 1511 AGTTGGGGAAAGATGCTCTCAACTGTGTTCAACAAGGGATGTCTCAGCCCCCTTCTTCTA 1570
||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1785 AGTTGGGTAAAGATGCTCTCAACTGTGTTGAACAAGGGATGTCTCAGTCCCCTTCTTCTA 1844
Query 1571 CTCTTGTCCATATTATCCCTTATGACTTCACTTTTAGATACCTTTTTTCGATCTGA 1626
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1845 CTCTTGTCCATATTATCCCTTATGACTTCACTTTTAGATATCTTTTTTCCATCTGA 1900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5