BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331135
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42660.1 | Symbols: | Protein of unknown function (DUF616) ... 2135 0.0
AT5G42655.1 | Symbols: | Disease resistance-responsive (dirige... 584 1e-165
> AT5G42660.1 | Symbols: | Protein of unknown function (DUF616)
| chr5:17102924-17105966 REVERSE LENGTH=1711
Length=1711
Score = 2135 bits (1156), Expect = 0.0
Identities = 1311/1386 (95%), Gaps = 9/1386 (1%)
Strand=Plus/Plus
Query 1 ATGTTCAACACCAACAACAGTGTCTCAATCTCAGTATCTGACGACGAATCCAACGATTTG 60
|||||| | | ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 182 ATGTTC-A-A-CAACAACAGTGTCTCGATCTCAGTATCTGACGACGAATCTAACGATTTG 238
Query 61 AATCGGATCCGAGCTTGAACCCGACGAAAGCGGAAGAAATTGAGTCACAGAACCACCTAC 120
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 239 AATCGGATCCGAGCTCGTACCCGACGAAAGCGGAAGAAAGTGAGTCACAGAACCAGCTAC 298
Query 121 GAGCTTCCTCGTCACGTTCTAAGGCTTTTCGTGAGATACTGGGTCGTATTAGTTTTTCTT 180
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 299 GAGCTTCCTCGTCATGTTCTAAGGCTTTTTGTGAGATACTGGGTCGTCTTAGTTTTTCTT 358
Query 181 CTCGCAGTTATGTTGCTTGT-TTTCGAATCAACGAGGATTGGGA-TCAAATCTAGTGTGT 238
||||| ||| ||||||||| ||| ||||||||||||| | ||| |||||||||||| |
Sbjct 359 CTCGCTGTTGGGTTGCTTGTATTT-GAATCAACGAGGA-TCGGATTCAAATCTAGTGACT 416
Query 239 TGAAGAATCCAGATTCGAGTGGAAAAGAGAGTCCTAGTAAGAAAAATGAAGGAAATTTGA 298
||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 417 TGAAGAAACCAGATTTGAATGGGAAAGAGAGTCCTAGTAAGAAAAATGAAGGAAATTTGA 476
Query 299 ACCGATTGGATCCAACTACGAAGGTTATTGGTGGTGTTAGACAACGTTGTTTGAAGCTTT 358
| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 477 ATCGATTGGATCCTACTACCAAAGTTATTGGTGGTGTTAGACAACGTTGTTTGAAGCTTT 536
Query 359 TACCACCTGAGGAGCTTGAGCATCTTGATATCTTAGAGCGTAAAGATTCAGGCACTCCGG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 537 TACCACCTGAGGAGCTTGAGCATCTTGATATCTTAGAGCGTAAAGATTCAGGCTCTCCGG 596
Query 419 TTAAGAGAGTTGTGTATCTTACTGATGCGAATGTGTCGATGGGTGAAATGAAAGCTGTTC 478
||||||||||||||||||| |||||| || |||||||| |||| ||||||| || |||||
Sbjct 597 TTAAGAGAGTTGTGTATCTAACTGATACGGATGTGTCGGTGGGAGAAATGAGAGGTGTTC 656
Query 479 GTGGTAATGGGACGCGGTTTAATTTATTCACGGGGAATCAGACTTTTGCTGAGAGAGAGA 538
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 657 GTGGTAATGGGACGCGGTTTAATTTATTCACGGGGAACCAGACTTTTGCTGAGAGAGAAA 716
Query 539 ATAGTTTTCAGGTAAGGGAAACAGTTTCTTTGCATTGTGGATTTTTTAATGAAAATGGGG 598
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 717 ATAGTTTTCAGGTAAGGGAAACAGTTTCTTTGCATTGTGGGTTTTTCAATGAAAATGGGG 776
Query 599 GATTTAGGATTTCGGATAAGGATAAGAGGTTTATGCA-AACATGTGAAGTTGTAGTCTCG 657
||||||||||||||||||||||||||| ||||||| | | |||||||||| || ||||||
Sbjct 777 GATTTAGGATTTCGGATAAGGATAAGAAGTTTATG-ACATCATGTGAAGTAGTGGTCTCG 835
Query 658 ACATGTGCGTTTGGTGGTGGTGATAATCTTTATGAACCTCTTGGAATGTCTAAGGCATCA 717
|| ||||||||||||||||| ||||| |||||||||||| |||||||||||||| |||||
Sbjct 836 ACGTGTGCGTTTGGTGGTGGAGATAACCTTTATGAACCTATTGGAATGTCTAAGACATCA 895
Query 718 AGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTGCAACACAAGAAGCA 777
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 896 AGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTACAACACAAGAAGCA 955
Query 778 GAGGGTCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTATTGTGATTGTAAAG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GAGGGTCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTATTGTGATTGTAAAG 1015
Query 838 GATCTGCCTTTTACAGACCAAAGGCTTAATGGGAAGATCCCAAAGATGTTGGCCCATCGC 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GATCTTCCTTTTACAGACCAAAGGCTTAATGGGAAGATCCCAAAGATGTTGGCCCATCGC 1075
Query 898 CTTTTCCCAGATGCAAAGTATTCGATTTGGGTAGACTCAAAGTCCCAGTTTAGAAGAGAC 957
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1076 CTTTTCCCAGATGCCAAGTACTCGATTTGGGTAGACTCAAAATCCCAGTTTAGAAGAGAC 1135
Query 958 CCACTTGGTGTACTAGATGCTCTTCTTTGGCGAACAAATTCAGTGCTTGCAATTTCAGAA 1017
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1136 CCACTTGGTGTACTAGATGCTCTTCTTTGGCGAACAAACTCGGTGCTTGCAATTTCAGAA 1195
Query 1018 CATGGAGCTCGAAGCAGCGTATACGATGAGGCAAAAGCTGTCGTGAACAAACACAAAGCT 1077
||||||||||||||||| |||||||| |||||||| |||||| | || ||||||||||||
Sbjct 1196 CATGGAGCTCGAAGCAGTGTATACGACGAGGCAAACGCTGTCATCAAGAAACACAAAGCT 1255
Query 1078 ACACCTGAAGAAGTTGAAGTCCAAATAAATCAATACCGACATGACAAATTACCTGAAGAT 1137
||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1256 ACACCCGAAGAAGTTGAAGTGCAGATAAATCAATACCGACATGACAAATTACCCGAAGAT 1315
Query 1138 AAAAGATTCAACGGGAAAAAAGCTTTATCCGAAGCCTCTGTGATTGTGAGGGAACACACT 1197
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1316 AAAAGATTCAACGGGAAAAAAGCTTTATCTGAAGCCTCTGTGATTGTAAGGGAACACACT 1375
Query 1198 CCATTGACAAATCTATTCATGTGCCTCTGGTTCAATGAAGTTGTCCGCTTCACTTCGCGT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CCATTGACAAATCTATTCATGTGCCTCTGGTTCAATGAAGTTGTCCGCTTCACTTCGCGT 1435
Query 1258 GATCAATTGAGTTTCCCATACGTTCTTTGGCGATTGAAAGTTCTCAAGAACATCAACATG 1317
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1436 GATCAATTGAGTTTCCCATACGTTCTTTGGCGTTTGAAAGTTCTCAAGAACATCAACATG 1495
Query 1318 TTCCCTGTGTGTACACGTAAAGATCTCGTCAATAGCATAGGCCATGTACGCAAGGCTAAA 1377
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTCCCTGTCTGTACACGTAAAGATCTCGTCAATAGCATAGGCCATGTACGCAAGGCTAAA 1555
Query 1378 CCATTA 1383
|| |||
Sbjct 1556 CCGTTA 1561
> AT5G42655.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr5:17102213-17102602 REVERSE
LENGTH=390
Length=390
Score = 584 bits (316), Expect = 1e-165
Identities = 352/370 (95%), Gaps = 0/370 (0%)
Strand=Plus/Plus
Query 1578 AGGAGGAGGAAAAGGAGCATTGATTTTCCGGCGTACGCTTACTGAAGGACCCGAGAATAA 1637
|||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 21 AGGAGGAGGAAAAGGAGCATTGATTTTCCGACGCACGCTCACGGAAGGACCCGAGAATAA 80
Query 1638 TTCACGGATCGTGGGCAAAGCTGAGGGATTTATAATCCCACATGAAGACTTTGCTAGCTC 1697
|||| ||||||| |||||||||||||| || |||||||| ||||||||||| |||| |||
Sbjct 81 TTCAAGGATCGTAGGCAAAGCTGAGGGGTTCATAATCCCGCATGAAGACTTCGCTAACTC 140
Query 1698 GGATTTTAACGTGATATACTTGACGTTGGAGACTCCTGAGTACACGGGGAGTGTTAGCAT 1757
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 141 GGATTTTAACGTGATATACTTGACGTTGGAGACGCCTGAGTACACGGGGAGTGTTAGCAT 200
Query 1758 TAGGAGTAGAGACATGGCACATAAATTGAAAGAGGTTATGGAGGTAGTGGGAGGGACAGG 1817
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TAGGAGCCGAGACATGACACATAAATTGAAAGAGGTTATGGAGGTAGTGGGAGGGACAGG 260
Query 1818 AGCTTTCGCCTTTGCTCGCGGAATCGCCATGTTTGCTGAGATTGATGATCATGAGGAAGA 1877
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 261 AGCTTTCGCCTTTGCTCGCGGAATCGCCATGTTTAATGAGATTGATGATCATGAGGAAGA 320
Query 1878 AGCTGTAACCACTTACCGTGTTAAGCTTCTACTTAGATTTCCACATACTTCTCACGTAGA 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 AGCTGTAACCACTTACCGTGTTAAGCTTCTACTTAGATTTCCACATACTTCTCACGTAGA 380
Query 1938 TCCACCATGA 1947
||||| ||||
Sbjct 381 TCCACAATGA 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96435246945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5