BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331140
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36095.1 | Symbols: | DNA binding | chr1:13491370-13492725 ... 156 3e-37
> AT1G36095.1 | Symbols: | DNA binding | chr1:13491370-13492725
REVERSE LENGTH=906
Length=906
Score = 156 bits (84), Expect = 3e-37
Identities = 174/216 (81%), Gaps = 12/216 (6%)
Strand=Plus/Plus
Query 73 GTCACAAATTGTGGAGTTCAACGTGGAAAACTGCATATTGTTGGAAGTTTTAGGAATGTT 132
||||||||| |||||||| || ||| ||||| ||||||| ||||| ||||||||||||||
Sbjct 103 GTCACAAATGGTGGAGTTAAAGGTGCAAAACAGCATATTCTTGGAGGTTTTAGGAATGTT 162
Query 133 ACTCAATGTTCTCTAGTTC-TAG-ATCATGTGAAGGAAGTAGTCAAAA-ATTTCAGGTTT 189
||||||||||||||||||| | || ||| | ||||| | | |||| ||| || | ||
Sbjct 163 ACTCAATGTTCTCTAGTTCCTCCTATTATGAG--GGAAGAAAT-AAAAGATTCCATGCTT 219
Query 190 AA-AAAGGCT-AAAGTTAAAGTCAGTACTGAAATGATGCCACCACCAGCCCCTTTATATT 247
|| ||| || ||| |||||| || |||| ||||||||||||| |||||| ||| ||||
Sbjct 220 AAGAAAA-CTGAAA-TTAAAGCCACTACTCAAATGATGCCACCCCCAGCCACTTCATATG 277
Query 248 ATGATTATGAT-AATGAGGAAGAAGAATTTGAAGTT 282
| ||||||| | || || ||||||| | |||||||
Sbjct 278 ACGATTATGGTGAA-GAAGAAGAAGCAGCTGAAGTT 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5