BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331145

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   185    2e-46


> AT5G42530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G25510.2); Has 
30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:17004738-17005393 REVERSE LENGTH=481
Length=481

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 104/106 (98%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  1    ATGACAtcttcaatggtctcttccatggttctctttctccttcttcttcttGTGTTTCCG  60
            ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  56   ATGACATCTTCTATGGTCTCTTCCATGGCTCTCTTTCTCCTTCTTCTTCTTGTGTTTCCG  115

Query  61   CATATGGATAAAGCCCTTGGCGCACAAGAGGAAGCCCAGAAACAAA  106
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  116  CATATGGATAAAGCCCTTGGCGCACAAGAGGAAGCCCAGAAACAAA  161



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5