BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331146
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42520.1 | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacyst... 1249 0.0
> AT5G42520.1 | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacysteine
6 | chr5:17000259-17002607 FORWARD LENGTH=1433
Length=1433
Score = 1249 bits (676), Expect = 0.0
Identities = 744/777 (96%), Gaps = 3/777 (0%)
Strand=Plus/Plus
Query 1 ATGGATGATGGTGGGCATCGTGAGAATGGTCGGCATAAAGCAGCAGCTCAGGGCCAGTGG 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 264 ATGGATGATGGTGGGCATCGTGAGAATGGTCGGCATAAAGCAGCAGTTCAGGGCCAGTGG 323
Query 61 TTGATGCAGCATCAGCCGTCGATGAAACAAGTTATGTCAATAATAGCAGAGCGGGATGCA 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 324 TTGATGCAGCATCAGCCGTCGATGAAACAAGTGATGTCGATAATAGCAGAGCGCGATGCA 383
Query 121 GCGATTCAGGAGAGAAATCTGGCGATATCAGAGAAAAAAGCAGCAGTAGCTGAAAGGGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 GCGATTCAGGAGAGAAATCTGGCGATATCAGAGAAAAAAGCAGCAGTAGCTGAAAGGGAC 443
Query 181 ATGGCGTTTCTTCAGAGGGACACAGCCATTGCTGAGCGCAACAATGCGATAATGGAGAGA 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 444 ATGGCGTTTCTTCAGAGGGACACCGCCATTGCTGAGCGCAACAATGCGATAATGGAGAGA 503
Query 241 GACAGTGCTCTTACAGCTCTCCAATACCGTGAGAACTCCATGGTTACTGCTGCTTCTGCC 300
||||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||
Sbjct 504 GACAGTGCTCTTACAGCACTCCAATACCGTGAGAACTCTATGGTTACTGCTCCTGCTGCC 563
Query 301 AATATGTCGGCATGTCCACCGGGATGTCAAATATCACGTGGTGTAAAACACTTGCACCAT 360
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 564 AATATGTCAGCATGTCCACCAGGATGTCAAATATCACGTGGTGTAAAACACTTGCACCAT 623
Query 361 CCGCACATGCATCATCATCATCAACAACATCACATACCTCAGTTGACTGAGAATGCATAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 624 CCGCACATGCATCATCATCATCAACAACATCACATACCTCAGTTGACTGAAAATGCATAT 683
Query 421 GAAACCAGAGAAATGGAGCCAAATGATGGTCTCCCGACATCACCACCTGCTGGATCCGCC 480
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 684 GAAACCAGAGAGATGGAGCCAAATGATGGTCTCCCAACATCACCACCTGCCGGATCCACC 743
Query 481 TTGGAATCTGCCAAACCAAAGCGCGGTAAAAGAGTGAAAGACCCAAAGGCGACTACACAA 540
|||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||
Sbjct 744 TTGGAATCTGCCAAACCAAAACGTGGTAAAAGAGTGAA---CCCAAAGGCGACAACACAA 800
Query 541 ACCACTGCTAATAAGAGAGGGCCAAAAAATCAGAGGAAGGTGAAGAAAGAGAGCGATGAC 600
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 801 ACTGCTGCTAATAAGAGAGGGCCAAAAAATCAGAGGAAGGTTAAGAAAGAGAGCGAGGAC 860
Query 601 GACTTAAACAAGATAATGTTTGTAAAGACAACACATGACTACACAGAAGAAGATTCAAGT 660
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 861 GACTTAAACAAGATAATGTTTGTAAAGACGACCCATGACTACACAGACGAAGATTCAAGT 920
Query 661 AAGCATATCTTAATAGGATCGAAATCCGACTGGAAAAGTCAAGAAATGGTGGGGCTGAAC 720
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 921 AAGCATATCTTAATAGGATCAAAATCTGACTGGAAAAGTCAAGAAATGGTGGGGCTGAAC 980
Query 721 CAAGTTGTTTATGACGAGACAACGATGCCACCACCTGTATGTTCATGTACAGGAGTT 777
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CAAGTGGTTTACGACGAGACAACGATGCCACCACCTGTATGTTCATGTACAGGAGTT 1037
Score = 388 bits (210), Expect = 4e-107
Identities = 222/228 (97%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 772 GGAGTTTGGCAATCATCGTGTTGCACAACCACACTATCAATGTACCCTTTACCGGCACTG 831
|||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 1065 GGAGGTTGGCAATCATCGTGTTGCACAACTACACTATCAATGTATCCTTTACCTGCACTG 1124
Query 832 CCCAACAAAAGGCATGCTCGAGTTGGTGGACGGAAAATGAGCGGAAGCGCGTTCAACAAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 CCCAACAAAAGGCATGCTCGAGTTGGTGGACGGAAAATGAGCGGAAGCGCGTTCAACAAG 1184
Query 892 CTTCTAAGCCGTCTTGCTGCAGAAGGGCATCATGATCTTTCAAACCCGGTCGATCTGAAG 951
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CTTCTAAGCCGGCTTGCTGCAGAAGGGCATCATGATCTTTCAAACCCGGTCGATCTGAAG 1244
Query 952 GACCATTGGGCAAAGCACGGTACAAACCGCTACATCACGATTAAATGA 999
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1245 GACCATTGGGCAAAGCACGGTACAAACCGCTACATTACGATTAAATGA 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5