BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331156 Length=2754 Score E Sequences producing significant alignments: (Bits) Value AT3G07610.3 | Symbols: IBM1 | Transcription factor jumonji (jmj... 887 0.0 > AT3G07610.3 | Symbols: IBM1 | Transcription factor jumonji (jmjC) domain-containing protein | chr3:2426069-2432913 FORWARD LENGTH=3266 Length=3266 Score = 887 bits (480), Expect = 0.0 Identities = 692/793 (87%), Gaps = 19/793 (2%) Strand=Plus/Plus Query 1821 GCAACCT-GATATTGAAAAACTGAAAAAGAAGCATGCTGAACAAGATCTCAAGGAGCTCT 1879 ||||||| || |||| ||| ||||||||||||||||| |||||||||||||||||||| | Sbjct 2239 GCAACCTGGA-ATTGGAAATCTGAAAAAGAAGCATGCCGAACAAGATCTCAAGGAGCTGT 2297 Query 1880 ATTTCTCAGTAGCTAACAAGGAGGAAATGATGGGGATTCTTGAAAAGTCTAGCCAAGAAG 1939 || ||||||||||||||||||||||||||||| |||||||||||| || || ||| ||| Sbjct 2298 ATAGCTCAGTAGCTAACAAGGAGGAAATGATGGAGATTCTTGAAAATTCCAGACAACAAG 2357 Query 1940 TCGAAAATGTTGAGACCGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAAGACATTC 1999 || |||||||||| || |||||||||||||||||||||||||||||||||||||| |||| Sbjct 2358 TCCAAAATGTTGAAACTGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAAGATATTC 2417 Query 2000 CAAAATTAGAACA-TTACCTTCAGAAACATTACAAGGAGTTTAGACATTTCTACTGTTGC 2058 | ||||||||| | |||| || |||||||| |||||||||| |||||| ||||||| || Sbjct 2418 CTAAATTAGAA-AGTTACATTGAGAAACATCACAAGGAGTTCAGACATCTCTACTGCTGT 2476 Query 2059 CCTTTGTCCCAGATTGCTCATCCAATACATGACCA-AACGTTCTATTTGACACGGTATCA 2117 ||| |||| ||| ||| |||||| ||||||||||| ||| |||||| |||| |||||||| Sbjct 2477 CCTGTGTCTCAGGTTGTTCATCCTATACATGACCAGAAC-TTCTATCTGACGCGGTATCA 2535 Query 2118 TATAGCGAAGCTGAAAGAAGAATATGGCATTGAACCATGGACCTTTAATCAGAAGCTTGG 2177 |||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 2536 TATAATGAAGCTGAAAGAAGAATATGGCATTGAACCTTGGACCTTCAATCAGAAGCTTGG 2595 Query 2178 GGATGCTGTCTTAATACCTGTAGGGTGCCCACATCAAGTCAGAAATTTGAAGTCTTGCAC 2237 |||||||| || ||||||||||| ||||| |||||||| |||||||||||||| |||| Sbjct 2596 TGATGCTGTTTTGATACCTGTAGGTTGCCCTCATCAAGTTAGAAATTTGAAGTCCTGCA- 2654 Query 2238 A-AAGGTAGCGCTTGACTTTGTCTCACCTGAAAATGTCAGCGAGTGTTTACGCTTGACAA 2296 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2655 ATAAGGTAGCGCTTGACTTCGTCTCACCTGAAAATGTCAGCGAGTGTTTACGCTTGACAA 2714 Query 2297 AACAATATCGTCTACTTCCACCAAATCATTTTGCTAAAGAAGACAAGTTAGGGGTAAAGA 2356 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 2715 AACAGTATCGTCTACTTCCACCAAATCATTTTGCAAAAGAAGACAAGTTAGGGGTTAAGA 2774 Query 2357 AGATGATAATTTATGCAGTTGATAGGGCTCTCAAAGACTTAAGTGGAAAGGAGTCTACAG 2416 |||||||| | |||||||||||| ||||||| ||||||||||||| || ||||| ||| Sbjct 2775 AGATGATAGTCCATGCAGTTGATAAAGCTCTCAGAGACTTAAGTGGAGAGAAGTCTCCAG 2834 Query 2417 AACCCGAAGAGACGAAA-AATTTAAAGAAAGGGAAGAAGTCAAAGGTGATAGTGAAGGCC 2475 |||| ||||||| |||| || || || |||| |||| || || | || ||||| Sbjct 2835 AACCTGAAGAGAAGAAACAAAATAT-GAGAGGGCCGAAG--AAGGGGGC-AGCCAAGGCA 2890 Query 2476 GTCGATAAGGCTCTCAAAGACTTACCTCCAAGTGAAAAG---TCTTCGGAAACCG-T-A- 2529 || | |||||||||||||||||| |||||||||||||| ||||||||| | | | | Sbjct 2891 GTTGCCAAGGCTCTCAAAGACTTATCTCCAAGTGAAAAGAAGTCTTCGGAAGCAGCTGAA 2950 Query 2530 GAGGAGAAATCAAACGGGATAGTCAATCCAATCGATAAGGCTCTCCAAGACTTACCCCCA 2589 ||||||| |||||| |||||||||||| |||||||||||| |||| |||||||||| ||| Sbjct 2951 GAGGAGATATCAAATGGGATAGTCAATGCAATCGATAAGGGTCTCAAAGACTTACCTCCA 3010 Query 2590 ACTGAAAAGAAGT 2602 | |||| |||||| Sbjct 3011 AGTGAAGAGAAGT 3023 Score = 715 bits (387), Expect = 0.0 Identities = 697/841 (83%), Gaps = 43/841 (5%) Strand=Plus/Plus Query 969 AGACCATATGAAGGACCCATCTATGTGGAAAGCAAATGAAGCTGGAATCATTACTTGTTA 1028 ||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||| Sbjct 1303 AGACCATATGAAGTACCCTTCTCTGTGGAAAGCAAATGAAGCTGGGATCATTACTTGTTG 1362 Query 1029 TTGTGGTGCCGAGAATTTAGTGTTGAAACGCCTACTTCCGGATGGTTGGGTATCTGA-TT 1087 ||||||||| | | | |||||| ||||||| |||||||||||||||||| ||||||| || Sbjct 1363 TTGTGGTGCTGGGGAGTTAGTGCTGAAACGACTACTTCCGGATGGTTGGATATCTGAGTT 1422 Query 1088 TGTATAAGCA-AGTAGAAAAATCTGCTGAAGCTGGCAAACTTTTGGATTTGTCTGAAACG 1146 || || || ||| |||||| |||||||||||||| | |||||| |||| |||||||| Sbjct 1423 GGT-CAA-CAGAGTTGAAAAAACTGCTGAAGCTGGCGAGCTTTTGAATTTACCTGAAACG 1480 Query 1147 GTTTCGGAACGATGCCCTTGTTTTAAGTCTGACGGTCATATCGACATGGACAACGGTAAA 1206 |||| ||| ||||||||||||| ||| |||||| | ||||| ||||| |||| | |||| Sbjct 1481 GTTTTGGAGCGATGCCCTTGTTCTAACTCTGACAGACATATTGACATAGACAGCTGTAAT 1540 Query 1207 GTGTTCAAGGCTGCTTGTCGAGAAGGTTCAGAGGACAATTATATATATTGTCCAAGTGTT 1266 |||| || ||||||||||||||||||||||| ||||||||| | || | |||||||| | Sbjct 1541 TTGTTAAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAATTATCTTTACTCTCCAAGTG-T 1599 Query 1267 A-GAGATGTTCAACAAGATGATCTGAAGCATTTTCAACATCATTGGGTCAAAGGTGAGCC 1325 | | |||||||||||||||||| ||||||||||||| || |||||||| ||||| ||||| Sbjct 1600 ATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCACCATTGGGTAAAAGGCGAGCC 1659 Query 1326 TGTGGTTATGAGGAATGTGCTTGAGGCTACATCTGGTTTAAGCTGGGAACCAATGGTAAC 1385 |||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1660 TGTGATTGTGAGAAATGTGCTTGAAGCTACATCTGGTTTAAGCTGGGAACCAATGGTAAT 1719 Query 1386 ATATCGTGCCTGCCGTCTGATACGCAACAAAAAGCATGAAACACTTCTAG-ATGTTAATT 1444 ||||||||||||| | |||| || | |||||| | ||||| || ||||| || Sbjct 1720 GCATCGTGCCTGCCGCCAGATAAGCCATGTCCAGCATGGATCACTTA-AGGATGTTG-TT 1777 Query 1445 -CTACTGATTGTCTGGACTTCTGTGAGGTAGAAA-TTACTCTTCATGAATTTTTCACCGG 1502 || ||||||| ||||||||||||||||| ||| ||| ||||||||||||||| || || Sbjct 1778 GCTGTTGATTGTTTGGACTTCTGTGAGGTA-AAAGTTAATCTTCATGAATTTTTTACTGG 1836 Query 1503 ATACATAGAGGGCAGATATGATCGAATGGGTTGGCCACGT-GTTCTAAAATTGAAAGATT 1561 ||||| || ||| |||||||||||||||||||||||| | ||||| ||| ||||||||| Sbjct 1837 ATACACGGATGGCCGATATGATCGAATGGGTTGGCCAC-TAGTTCTGAAACTGAAAGATT 1895 Query 1562 GGCCTC-ATCTAAGAGT-T-CT----TAACTT-CT---T-ATGC--AG---TT-T---G- 1599 |||||| | |||| ||| | | |||||| | | |||| || || | | Sbjct 1896 GGCCTCCAGCTAA-AGTCTTCAAAGATAACTTGCCACGTCATGCTGAGGAGTTCTTATGT 1954 Query 1600 ------CCTTTGAAGCAGTACACTCACCCAACTAATGGACCTTTGAATCTGGCTGTCAAA 1653 ||||||||||| |||||||| || |||||||||||||||||| |||||||| Sbjct 1955 AGTTTGCCTTTGAAGCATTACACTCATCCGGTTAATGGACCTTTGAATCTCGCTGTCAAG 2014 Query 1654 CTGCCTAAAAATTGCTCGAAGCCAGACATGGGGCCAAAGACTTACATTGCTTATGGATTT 1713 || || ||||||||| ||||||||||||||| |||||||| ||| |||||| ||||||| Sbjct 2015 CTTCCCCAAAATTGCTTGAAGCCAGACATGGGACCAAAGACGTACGTTGCTTCTGGATTT 2074 Query 1714 GCGCAAGAATTTGGCCGCGGAGATTCTGTAACTAAGCTCCATTGCGACATGTCTGATGCG 1773 || |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 2075 GCTCAAGAATTAGGCCGTGGAGATTCTGTTACTAAGCTCCACTGCGACATGTCTGATGCG 2134 Query 1774 G 1774 | Sbjct 2135 G 2135 Score = 508 bits (275), Expect = 8e-143 Identities = 505/611 (83%), Gaps = 35/611 (6%) Strand=Plus/Plus Query 351 CAATATGTGTCATCAATGTCAACGGAACGATAGAGGGCA-AGTTGTGCGGTGTCAGAATT 409 ||||||||| |||||||||||| || |||| | || | |||| |||||||||| | Sbjct 535 CAATATGTGCCATCAATGTCAAAAGAGCGAT--A-GG-ATTGTTGAACGGTGTCAGACCT 590 Query 410 GCAAGAAAAAGAGATT-TCG-CCTCCCATGCTTAAGA-ACTTGGTACCCCAACATAGCAA 466 |||| | ||| | || | | | | |||||||| || |||||||||||| ||||||| Sbjct 591 GCAATAGTAAGCG-TTATTGTCAT-CCATGCTT-GGACACTTGGTACCCCCTTATAGCAA 647 Query 467 AAGAAGATATAGCCAAGAAATGCCCATG--CTGCTGTAGCATTTGCTGTTGCAGAAG-AT 523 |||||||| | ||||||||||| |||| ||||| ||| | |||| |||||| || || Sbjct 648 AAGAAGATGTTGCCAAGAAATG--CATGTTCTGCTCTAGTACTTGCAATTGCAG-AGCAT 704 Query 524 GCTTGCGTCTAGATACTAAAATAAAAGGGATAAAGTCGAATCTCGA-GGTCAGCAAGGAT 582 |||||||||||||||||||| | ||||||||||| ||||| ||| | |||||| |||| Sbjct 705 GCTTGCGTCTAGATACTAAATTGAAAGGGATAAATTCGAACCTC-ATAGTCAGCGAGGAA 763 Query 583 GCAAAA-ATTAAATTCTCTAAATATACTT-TGCGGTGGCTTCTCCCACATATG-AAGGAA 639 | |||| | || |||||| | || || ||| | | |||||||||||| || |||| | Sbjct 764 G-AAAAGGTCCAAGCCTCTAAGTTTA-TTCTGCAGAGCCTTCTCCCACATCTGAAAGG-A 820 Query 640 ATAAATGATGAACAAATTGCTGAGAAGGAACTTGAGG-CAAAGATAT-CTGGACTGGAGT 697 ||||||||||||||| |||||||||||||| |||||| |||| |||| | |||||| ||| Sbjct 821 ATAAATGATGAACAAGTTGCTGAGAAGGAAGTTGAGGCCAAA-ATATAC-GGACTGAAGT 878 Query 698 TTGAAGAGGTGAAGCCCCAAGACGCTGAATCTCCCCCCGATGAAAGACTA-ACTTGTGAT 756 |||||||||||| ||||||||||||| || || ||| |||||||||||| || |||||| Sbjct 879 TTGAAGAGGTGAGGCCCCAAGACGCTAAAGCTTTCCCTGATGAAAGACTATAC-TGTGAT 937 Query 757 ATCTGCAAGACTTCGATCTTTGATCTTCATAGGAGTTGCGAGGACTGTTCTTGTGATATC 816 |||||||||||||| |||| |||||| ||||||| |||| || |||| || ||||||| Sbjct 938 ATCTGCAAGACTTCTATCTATGATCTCCATAGGAATTGCAAGTCCTGTAGTTTTGATATC 997 Query 817 TGCCTTA-CTTGTTGCCTTGAGATCCGCAATGGAAAGCCTCAGGCATGTAAGGAGGATGT 875 ||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 998 TGCCTTAGC-TGTTGCCTTGAGATCCGCAATGGAAAGGCTCTGGCATGTAAGGAGGATGT 1056 Query 876 GTCTTGCAATTATATTAACCGAGGTTTAGAGTATGCACATGGAGGAA-AAGGACAAGTTA 934 |||||| |||||||||||||||||||||||||||| ||||||| || ||||| |||| | Sbjct 1057 GTCTTGGAATTATATTAACCGAGGTTTAGAGTATGAACATGGAC-AAGAAGGAAAAGTGA 1115 Query 935 TTGAAATGCCG 945 |||||| |||| Sbjct 1116 TTGAAAAGCCG 1126 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 136805253561 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5