BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331156
Length=2754
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07610.3 | Symbols: IBM1 | Transcription factor jumonji (jmj... 887 0.0
> AT3G07610.3 | Symbols: IBM1 | Transcription factor jumonji (jmjC)
domain-containing protein | chr3:2426069-2432913 FORWARD
LENGTH=3266
Length=3266
Score = 887 bits (480), Expect = 0.0
Identities = 692/793 (87%), Gaps = 19/793 (2%)
Strand=Plus/Plus
Query 1821 GCAACCT-GATATTGAAAAACTGAAAAAGAAGCATGCTGAACAAGATCTCAAGGAGCTCT 1879
||||||| || |||| ||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 2239 GCAACCTGGA-ATTGGAAATCTGAAAAAGAAGCATGCCGAACAAGATCTCAAGGAGCTGT 2297
Query 1880 ATTTCTCAGTAGCTAACAAGGAGGAAATGATGGGGATTCTTGAAAAGTCTAGCCAAGAAG 1939
|| ||||||||||||||||||||||||||||| |||||||||||| || || ||| |||
Sbjct 2298 ATAGCTCAGTAGCTAACAAGGAGGAAATGATGGAGATTCTTGAAAATTCCAGACAACAAG 2357
Query 1940 TCGAAAATGTTGAGACCGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAAGACATTC 1999
|| |||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2358 TCCAAAATGTTGAAACTGATGATGGAGCTCTTTGGGACATTTTCCGTAGAGAAGATATTC 2417
Query 2000 CAAAATTAGAACA-TTACCTTCAGAAACATTACAAGGAGTTTAGACATTTCTACTGTTGC 2058
| ||||||||| | |||| || |||||||| |||||||||| |||||| ||||||| ||
Sbjct 2418 CTAAATTAGAA-AGTTACATTGAGAAACATCACAAGGAGTTCAGACATCTCTACTGCTGT 2476
Query 2059 CCTTTGTCCCAGATTGCTCATCCAATACATGACCA-AACGTTCTATTTGACACGGTATCA 2117
||| |||| ||| ||| |||||| ||||||||||| ||| |||||| |||| ||||||||
Sbjct 2477 CCTGTGTCTCAGGTTGTTCATCCTATACATGACCAGAAC-TTCTATCTGACGCGGTATCA 2535
Query 2118 TATAGCGAAGCTGAAAGAAGAATATGGCATTGAACCATGGACCTTTAATCAGAAGCTTGG 2177
|||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2536 TATAATGAAGCTGAAAGAAGAATATGGCATTGAACCTTGGACCTTCAATCAGAAGCTTGG 2595
Query 2178 GGATGCTGTCTTAATACCTGTAGGGTGCCCACATCAAGTCAGAAATTTGAAGTCTTGCAC 2237
|||||||| || ||||||||||| ||||| |||||||| |||||||||||||| ||||
Sbjct 2596 TGATGCTGTTTTGATACCTGTAGGTTGCCCTCATCAAGTTAGAAATTTGAAGTCCTGCA- 2654
Query 2238 A-AAGGTAGCGCTTGACTTTGTCTCACCTGAAAATGTCAGCGAGTGTTTACGCTTGACAA 2296
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2655 ATAAGGTAGCGCTTGACTTCGTCTCACCTGAAAATGTCAGCGAGTGTTTACGCTTGACAA 2714
Query 2297 AACAATATCGTCTACTTCCACCAAATCATTTTGCTAAAGAAGACAAGTTAGGGGTAAAGA 2356
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2715 AACAGTATCGTCTACTTCCACCAAATCATTTTGCAAAAGAAGACAAGTTAGGGGTTAAGA 2774
Query 2357 AGATGATAATTTATGCAGTTGATAGGGCTCTCAAAGACTTAAGTGGAAAGGAGTCTACAG 2416
|||||||| | |||||||||||| ||||||| ||||||||||||| || ||||| |||
Sbjct 2775 AGATGATAGTCCATGCAGTTGATAAAGCTCTCAGAGACTTAAGTGGAGAGAAGTCTCCAG 2834
Query 2417 AACCCGAAGAGACGAAA-AATTTAAAGAAAGGGAAGAAGTCAAAGGTGATAGTGAAGGCC 2475
|||| ||||||| |||| || || || |||| |||| || || | || |||||
Sbjct 2835 AACCTGAAGAGAAGAAACAAAATAT-GAGAGGGCCGAAG--AAGGGGGC-AGCCAAGGCA 2890
Query 2476 GTCGATAAGGCTCTCAAAGACTTACCTCCAAGTGAAAAG---TCTTCGGAAACCG-T-A- 2529
|| | |||||||||||||||||| |||||||||||||| ||||||||| | | | |
Sbjct 2891 GTTGCCAAGGCTCTCAAAGACTTATCTCCAAGTGAAAAGAAGTCTTCGGAAGCAGCTGAA 2950
Query 2530 GAGGAGAAATCAAACGGGATAGTCAATCCAATCGATAAGGCTCTCCAAGACTTACCCCCA 2589
||||||| |||||| |||||||||||| |||||||||||| |||| |||||||||| |||
Sbjct 2951 GAGGAGATATCAAATGGGATAGTCAATGCAATCGATAAGGGTCTCAAAGACTTACCTCCA 3010
Query 2590 ACTGAAAAGAAGT 2602
| |||| ||||||
Sbjct 3011 AGTGAAGAGAAGT 3023
Score = 715 bits (387), Expect = 0.0
Identities = 697/841 (83%), Gaps = 43/841 (5%)
Strand=Plus/Plus
Query 969 AGACCATATGAAGGACCCATCTATGTGGAAAGCAAATGAAGCTGGAATCATTACTTGTTA 1028
||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 1303 AGACCATATGAAGTACCCTTCTCTGTGGAAAGCAAATGAAGCTGGGATCATTACTTGTTG 1362
Query 1029 TTGTGGTGCCGAGAATTTAGTGTTGAAACGCCTACTTCCGGATGGTTGGGTATCTGA-TT 1087
||||||||| | | | |||||| ||||||| |||||||||||||||||| ||||||| ||
Sbjct 1363 TTGTGGTGCTGGGGAGTTAGTGCTGAAACGACTACTTCCGGATGGTTGGATATCTGAGTT 1422
Query 1088 TGTATAAGCA-AGTAGAAAAATCTGCTGAAGCTGGCAAACTTTTGGATTTGTCTGAAACG 1146
|| || || ||| |||||| |||||||||||||| | |||||| |||| ||||||||
Sbjct 1423 GGT-CAA-CAGAGTTGAAAAAACTGCTGAAGCTGGCGAGCTTTTGAATTTACCTGAAACG 1480
Query 1147 GTTTCGGAACGATGCCCTTGTTTTAAGTCTGACGGTCATATCGACATGGACAACGGTAAA 1206
|||| ||| ||||||||||||| ||| |||||| | ||||| ||||| |||| | ||||
Sbjct 1481 GTTTTGGAGCGATGCCCTTGTTCTAACTCTGACAGACATATTGACATAGACAGCTGTAAT 1540
Query 1207 GTGTTCAAGGCTGCTTGTCGAGAAGGTTCAGAGGACAATTATATATATTGTCCAAGTGTT 1266
|||| || ||||||||||||||||||||||| ||||||||| | || | |||||||| |
Sbjct 1541 TTGTTAAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAATTATCTTTACTCTCCAAGTG-T 1599
Query 1267 A-GAGATGTTCAACAAGATGATCTGAAGCATTTTCAACATCATTGGGTCAAAGGTGAGCC 1325
| | |||||||||||||||||| ||||||||||||| || |||||||| ||||| |||||
Sbjct 1600 ATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCACCATTGGGTAAAAGGCGAGCC 1659
Query 1326 TGTGGTTATGAGGAATGTGCTTGAGGCTACATCTGGTTTAAGCTGGGAACCAATGGTAAC 1385
|||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1660 TGTGATTGTGAGAAATGTGCTTGAAGCTACATCTGGTTTAAGCTGGGAACCAATGGTAAT 1719
Query 1386 ATATCGTGCCTGCCGTCTGATACGCAACAAAAAGCATGAAACACTTCTAG-ATGTTAATT 1444
||||||||||||| | |||| || | |||||| | ||||| || ||||| ||
Sbjct 1720 GCATCGTGCCTGCCGCCAGATAAGCCATGTCCAGCATGGATCACTTA-AGGATGTTG-TT 1777
Query 1445 -CTACTGATTGTCTGGACTTCTGTGAGGTAGAAA-TTACTCTTCATGAATTTTTCACCGG 1502
|| ||||||| ||||||||||||||||| ||| ||| ||||||||||||||| || ||
Sbjct 1778 GCTGTTGATTGTTTGGACTTCTGTGAGGTA-AAAGTTAATCTTCATGAATTTTTTACTGG 1836
Query 1503 ATACATAGAGGGCAGATATGATCGAATGGGTTGGCCACGT-GTTCTAAAATTGAAAGATT 1561
||||| || ||| |||||||||||||||||||||||| | ||||| ||| |||||||||
Sbjct 1837 ATACACGGATGGCCGATATGATCGAATGGGTTGGCCAC-TAGTTCTGAAACTGAAAGATT 1895
Query 1562 GGCCTC-ATCTAAGAGT-T-CT----TAACTT-CT---T-ATGC--AG---TT-T---G- 1599
|||||| | |||| ||| | | |||||| | | |||| || || | |
Sbjct 1896 GGCCTCCAGCTAA-AGTCTTCAAAGATAACTTGCCACGTCATGCTGAGGAGTTCTTATGT 1954
Query 1600 ------CCTTTGAAGCAGTACACTCACCCAACTAATGGACCTTTGAATCTGGCTGTCAAA 1653
||||||||||| |||||||| || |||||||||||||||||| ||||||||
Sbjct 1955 AGTTTGCCTTTGAAGCATTACACTCATCCGGTTAATGGACCTTTGAATCTCGCTGTCAAG 2014
Query 1654 CTGCCTAAAAATTGCTCGAAGCCAGACATGGGGCCAAAGACTTACATTGCTTATGGATTT 1713
|| || ||||||||| ||||||||||||||| |||||||| ||| |||||| |||||||
Sbjct 2015 CTTCCCCAAAATTGCTTGAAGCCAGACATGGGACCAAAGACGTACGTTGCTTCTGGATTT 2074
Query 1714 GCGCAAGAATTTGGCCGCGGAGATTCTGTAACTAAGCTCCATTGCGACATGTCTGATGCG 1773
|| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2075 GCTCAAGAATTAGGCCGTGGAGATTCTGTTACTAAGCTCCACTGCGACATGTCTGATGCG 2134
Query 1774 G 1774
|
Sbjct 2135 G 2135
Score = 508 bits (275), Expect = 8e-143
Identities = 505/611 (83%), Gaps = 35/611 (6%)
Strand=Plus/Plus
Query 351 CAATATGTGTCATCAATGTCAACGGAACGATAGAGGGCA-AGTTGTGCGGTGTCAGAATT 409
||||||||| |||||||||||| || |||| | || | |||| |||||||||| |
Sbjct 535 CAATATGTGCCATCAATGTCAAAAGAGCGAT--A-GG-ATTGTTGAACGGTGTCAGACCT 590
Query 410 GCAAGAAAAAGAGATT-TCG-CCTCCCATGCTTAAGA-ACTTGGTACCCCAACATAGCAA 466
|||| | ||| | || | | | | |||||||| || |||||||||||| |||||||
Sbjct 591 GCAATAGTAAGCG-TTATTGTCAT-CCATGCTT-GGACACTTGGTACCCCCTTATAGCAA 647
Query 467 AAGAAGATATAGCCAAGAAATGCCCATG--CTGCTGTAGCATTTGCTGTTGCAGAAG-AT 523
|||||||| | ||||||||||| |||| ||||| ||| | |||| |||||| || ||
Sbjct 648 AAGAAGATGTTGCCAAGAAATG--CATGTTCTGCTCTAGTACTTGCAATTGCAG-AGCAT 704
Query 524 GCTTGCGTCTAGATACTAAAATAAAAGGGATAAAGTCGAATCTCGA-GGTCAGCAAGGAT 582
|||||||||||||||||||| | ||||||||||| ||||| ||| | |||||| ||||
Sbjct 705 GCTTGCGTCTAGATACTAAATTGAAAGGGATAAATTCGAACCTC-ATAGTCAGCGAGGAA 763
Query 583 GCAAAA-ATTAAATTCTCTAAATATACTT-TGCGGTGGCTTCTCCCACATATG-AAGGAA 639
| |||| | || |||||| | || || ||| | | |||||||||||| || |||| |
Sbjct 764 G-AAAAGGTCCAAGCCTCTAAGTTTA-TTCTGCAGAGCCTTCTCCCACATCTGAAAGG-A 820
Query 640 ATAAATGATGAACAAATTGCTGAGAAGGAACTTGAGG-CAAAGATAT-CTGGACTGGAGT 697
||||||||||||||| |||||||||||||| |||||| |||| |||| | |||||| |||
Sbjct 821 ATAAATGATGAACAAGTTGCTGAGAAGGAAGTTGAGGCCAAA-ATATAC-GGACTGAAGT 878
Query 698 TTGAAGAGGTGAAGCCCCAAGACGCTGAATCTCCCCCCGATGAAAGACTA-ACTTGTGAT 756
|||||||||||| ||||||||||||| || || ||| |||||||||||| || ||||||
Sbjct 879 TTGAAGAGGTGAGGCCCCAAGACGCTAAAGCTTTCCCTGATGAAAGACTATAC-TGTGAT 937
Query 757 ATCTGCAAGACTTCGATCTTTGATCTTCATAGGAGTTGCGAGGACTGTTCTTGTGATATC 816
|||||||||||||| |||| |||||| ||||||| |||| || |||| || |||||||
Sbjct 938 ATCTGCAAGACTTCTATCTATGATCTCCATAGGAATTGCAAGTCCTGTAGTTTTGATATC 997
Query 817 TGCCTTA-CTTGTTGCCTTGAGATCCGCAATGGAAAGCCTCAGGCATGTAAGGAGGATGT 875
||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 998 TGCCTTAGC-TGTTGCCTTGAGATCCGCAATGGAAAGGCTCTGGCATGTAAGGAGGATGT 1056
Query 876 GTCTTGCAATTATATTAACCGAGGTTTAGAGTATGCACATGGAGGAA-AAGGACAAGTTA 934
|||||| |||||||||||||||||||||||||||| ||||||| || ||||| |||| |
Sbjct 1057 GTCTTGGAATTATATTAACCGAGGTTTAGAGTATGAACATGGAC-AAGAAGGAAAAGTGA 1115
Query 935 TTGAAATGCCG 945
|||||| ||||
Sbjct 1116 TTGAAAAGCCG 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136805253561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5