BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331168
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42320.1 | Symbols: | Zn-dependent exopeptidases superfamil... 1842 0.0
> AT5G42320.1 | Symbols: | Zn-dependent exopeptidases superfamily
protein | chr5:16918489-16921245 REVERSE LENGTH=1352
Length=1352
Score = 1842 bits (997), Expect = 0.0
Identities = 1101/1153 (95%), Gaps = 0/1153 (0%)
Strand=Plus/Plus
Query 225 CAGTGATGATTTAATGGAGCAGATACATTCTTTGGTACATCGACATCCAGATAAGCTCTC 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 CAGTGATGATTTAATGGAGCAGATACATTCTTTGGTACATCGACATCCAGATAAGCTCTC 97
Query 285 GATTGAGATGATTAAATCGGGAAACAAAGGCTACAATGCAGAGGTTAACGTGGTTACTTA 344
||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 98 GATTGAGTTGATTAAATCGGGAAACAAAGGCTACAATGCAGAGGTCAATGTGGTAACTTA 157
Query 345 TTGTCGCGGTGGTAGAGAGAGTGATGACAGATCAAACTTTAGGATCCTTCTTACTTTTGG 404
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 158 TTGTCGCGGTGGTAAAGAGAGTGATGACAGATCAAACTTTAGGATTCTTCTTACTTTTGG 217
Query 405 TCAGCATGGGAGAGAGCTTATCACCTCTGAACTTGCCTTTCGGATATTATCAATTTTAAG 464
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 218 TCAGCATGGGAGAGAGCTTATCACCTCTGAACTTGCTTTTCGGATTTTGTCAATTTTGAG 277
Query 465 CGAAGAACAGTTCCTACCAAAGAAAAACGGAGCAGCCCTGAACAACACATTAGACAAGCT 524
||||||||||||| ||||||| |||||||||| | |||||| |||||||||||||| ||
Sbjct 278 CGAAGAACAGTTCTTACCAAATAAAAACGGAGGAATCCTGAAAAACACATTAGACAAACT 337
Query 525 AGTCATAAAAATGGTTCCTATAGAAAACCCAAATGGTCGCAAACGTGTTGAATCTGGAGA 584
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 338 AGTCATAAAAATGGTTCCTATAGAAAACCCGAATGGTCGCAAACGTGTTGAATCTGGAGA 397
Query 585 TCTTTGTGAACGAAGAAATGGAAGAGGAGTTGACCTGAACCGAAATTGGGGTGTTGACTG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TCTTTGTGAACGAAGAAATGGAAGAGGAGTTGACCTGAACCGAAATTGGGGTGTTGACTG 457
Query 645 GGGCAAGAAAGAAAAGGATTATGATCCATATGAAGAGAATCCAGGAACTGCTCCGTTTAG 704
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 458 GGGCAAGAAAGAAAAGGATTATGATCCATCTGAAGAGAATCCAGGAACTGCTCCGTTTAG 517
Query 705 TGAGCCTGAAACTCAAATTATGCGGAAGCTAGCTATATCATTTGATCCTCACATATGGAT 764
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 518 TGAGCCCGAAACTCAAATAATGCGGAAGCTAGCCATATCATTTGATCCTCACATATGGAT 577
Query 765 AAACGTGCATTCTGGAATGGAGGCTTTATTTATGCCGTATGACCACAAAAACATAACCCC 824
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 AAATGTGCATTCTGGAATGGAGGCTTTATTTATGCCGTATGACCACAAAAACATAACCCC 637
Query 825 AGAGGGATTGCCTTCGCAGAAAATGAGGACCTTACTTGAAAAACTTAATAAATTTCATTG 884
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 638 AGAGGGATTACCTTCACAGAAAATGAGGACCTTACTTGAAAAACTTAACAAATTTCATTG 697
Query 885 TCACAACCGCTGCATGATTGGATCTGGCGGCGGCTCTGTTGGGTACCTGGCACATGGTAC 944
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 698 TCACGACCGCTGCATGATTGGATCTGGCGGCGGCTCTGTTGGGTATTTGGCACATGGTAC 757
Query 945 AGCTACAGACTATATCTATGATGTTGTAAAGGCACCAATGGCATTTACCTTTGAGATTTA 1004
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 758 AGCTACAGATTATATCTATGATGTTGTAAAGGCACCCATGGCATTCACCTTTGAGATCTA 817
Query 1005 TGGGGACAACCAAACTGCTTCAAGAGATTGCTTTAAAATGTTCAACCCTGTTGATCTACC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TGGGGACAACCAAACTGCTTCAAGAGATTGCTTTAAAATGTTCAACCCTGTTGATCTACC 877
Query 1065 CAATTTCAAGAGAGTTCTGAATGACTGGTCTGCTGCATTCTTCACGATTTTCCAACTGGG 1124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CAATTTCAAGAGAGTTCTTAATGACTGGTCTGCTGCATTCTTCACGATTTTCCAACTGGG 937
Query 1125 ACCGCTCCAGTTAGACGGAAACAGTTCCAAGGTTGCAGAGAAATGGGTGTCGATAGACGA 1184
||||||||| ||||||||||||| |||||| | |||||| ||||||||||| ||||||||
Sbjct 938 ACCGCTCCACTTAGACGGAAACACTTCCAAAGCTGCAGACAAATGGGTGTCTATAGACGA 997
Query 1185 GTATCTGGACGGCTACTTGGTGGAAAGGAAGAATAGATATGGGAAGAACATGGAAGTGAT 1244
|||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 998 GTATTTGGATGGCTACTTGGTGGAAAGGAAGAACAGATATGGGAAAAACATGGAAGTGAT 1057
Query 1245 TGATGTCGGAATGCAGGAGATAAAAACTTATTTCAGGCTCTTCTTGTTGTCCTCAGTACT 1304
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1058 CGATGTCGGAATGCAAGAGATAAAAACTTACTTCAGGCTCTTCTTGTTGTCTTCAGTACT 1117
Query 1305 TCTGATGTTCATGTTCTGTTCCAGGATAGCCAAAAGCAAGTATAGTAGAAACTCCATACC 1364
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1118 TCTGATGTTCATGTTCTGTTCCAGGATAGCGAAGAGCAAGTATAGTAGAAACTCCATGCC 1177
Query 1365 TGTCATGCCATGA 1377
|||| ||||||||
Sbjct 1178 TGTCTTGCCATGA 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5