BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331170 Length=807 Score E Sequences producing significant alignments: (Bits) Value AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 148 6e-35 > AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1, blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)} | chr3:11627225-11630679 FORWARD LENGTH=3455 Length=3455 Score = 148 bits (80), Expect = 6e-35 Identities = 171/211 (81%), Gaps = 22/211 (10%) Strand=Plus/Plus Query 506 CGCTTAAACACGGG-CATCATTATGAGAGTCCAAGTTCTGCTTGTTTTCCTTATGGCAAT 564 |||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| | Sbjct 1305 CGCTTAAACACGGGTCATCATTTTGGGACTCCAAGTTCTGCTTGTTTTCCTTATGGCAGT 1364 Query 565 CCAATGCCTGGTGGTTTTCCTTAC--GA--C---A--GTG--G-TCA---ATGGGGTGCA 609 ||||| ||||||||||||||||| || | | ||| | | | ||||||| || Sbjct 1365 TCAATGTCTGGTGGTTTTCCTTACAAGAGTCCTTATTGTGATGGTAATTCATGGGGTACA 1424 Query 610 CCGCCAAATGCTCCACGATATGGGG--CTCCACCAAATGCTCCACAATGGGTTACACCAC 667 || ||||||||||||| | |||||| ||||||||| ||| |||||||||| || | | Sbjct 1425 CCACCAAATGCTCCAC-A-ATGGGGTACTCCACCAAGTGCACCACAATGGGGTA-ATCTT 1481 Query 668 -CAAATGGGCCACAATGGATTTCATCACCAA 697 ||||||| |||||||||| ||||| ||||| Sbjct 1482 TCAAATGGACCACAATGGAGTTCATAACCAA 1512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39283102954 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5