BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331170

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29773.1 | Symbols:  | pseudogene, similar to OSJNBb0043H09....   148    6e-35


> AT3G29773.1 | Symbols:  | pseudogene, similar to OSJNBb0043H09.1, 
 blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611 
OSJNBb0043H09.1 {Oryza sativa 
(japonica cultivar-group)} | chr3:11627225-11630679 FORWARD 
LENGTH=3455
Length=3455

 Score =  148 bits (80),  Expect = 6e-35
 Identities = 171/211 (81%), Gaps = 22/211 (10%)
 Strand=Plus/Plus

Query  506   CGCTTAAACACGGG-CATCATTATGAGAGTCCAAGTTCTGCTTGTTTTCCTTATGGCAAT  564
             |||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| |
Sbjct  1305  CGCTTAAACACGGGTCATCATTTTGGGACTCCAAGTTCTGCTTGTTTTCCTTATGGCAGT  1364

Query  565   CCAATGCCTGGTGGTTTTCCTTAC--GA--C---A--GTG--G-TCA---ATGGGGTGCA  609
              ||||| |||||||||||||||||  ||  |   |  |||  | | |   ||||||| ||
Sbjct  1365  TCAATGTCTGGTGGTTTTCCTTACAAGAGTCCTTATTGTGATGGTAATTCATGGGGTACA  1424

Query  610   CCGCCAAATGCTCCACGATATGGGG--CTCCACCAAATGCTCCACAATGGGTTACACCAC  667
             || ||||||||||||| | ||||||  ||||||||| ||| |||||||||| || | |  
Sbjct  1425  CCACCAAATGCTCCAC-A-ATGGGGTACTCCACCAAGTGCACCACAATGGGGTA-ATCTT  1481

Query  668   -CAAATGGGCCACAATGGATTTCATCACCAA  697
              ||||||| |||||||||| ||||| |||||
Sbjct  1482  TCAAATGGACCACAATGGAGTTCATAACCAA  1512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39283102954


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5