BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331180

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42223.1 | Symbols:  | Defensin-like (DEFL) family protein |...   204    3e-52


> AT5G42223.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:16878610-16878945 REVERSE LENGTH=255
Length=255

 Score =  204 bits (110),  Expect = 3e-52
 Identities = 130/140 (93%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  64   CAAGAAGATAAATGCTACAGCCCAGAACCGTGTAAAAATGGGCCCGAAGGATGCTTGttt  123
            |||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||| 
Sbjct  109  CAAGAAGATAAATGCTACGGCCCAGAACCGTGTAAAAATGGTTACGAAGGATGCTTGTTC  168

Query  124  ttttGTGCACGAATAGCCTATGACTTATATGGTGAATGTATTATGAAGCCTGATCATCAA  183
            ||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||||||||
Sbjct  169  TTTTGTGTAAGAATAGCCTATTACTTATATGGGGAATGTACTATGAAGCCTGATCATCAA  228

Query  184  AAGCATTGTTGTTGTGTGAC  203
            ||||||||||||||||||||
Sbjct  229  AAGCATTGTTGTTGTGTGAC  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9953014302


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5