BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331182
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42210.1 | Symbols: | Major facilitator superfamily protein... 1389 0.0
> AT5G42210.1 | Symbols: | Major facilitator superfamily protein
| chr5:16866040-16870887 FORWARD LENGTH=1677
Length=1677
Score = 1389 bits (752), Expect = 0.0
Identities = 916/992 (92%), Gaps = 24/992 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAAACGACAACCTTTCATGGACTAGGACACCTCTTC-TTCACAATCTTCTTGTA 59
|||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 49 ATGGAGGAAACGACGACCTTCCATGGACTAGGACACCTCTTCATT-ACAATCTTCTTGTA 107
Query 60 CTGCTTCTCATCATTCATCGTGGCTCCTGCGATAACCGATATCAGCATGGCTGCGCTATG 119
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 108 CTGCTTCTCATCATTCATCGTGGCTCCGGTGATAACCGACATCAGCATGGCTGCGCTATG 167
Query 120 TCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAACAAGTTATCAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TCCCGGAAAAGACGAGTGTTCTCTCGCCATTTACCTCTCCGGCTTTCAACAAGTTATCAC 227
Query 180 GGGAGTGGGATCGTTGATGATGATGCCATTGATGGGAAGCTTGTCGGACAAGCATGGTAG 239
|||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 228 GGGAGTGGGATCATTGATTATGATGCCATTGGTGGGAAGCTTGTCAGACAAGCATGGGAG 287
Query 240 AAAATGTTTGCTTACTCTTCCAATGACACTCCACATTTTGCCTCTTGCGACATTAGCGTA 299
||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 288 AAAATGTTTGCTTACTCTTCCAATGACACTCAACATTTTACCTCTTGTGACATTAGCGTA 347
Query 300 TAGTACTAGAGGGACGACCATCTTCTACATGTACTATGTACTCAAGACT-TCCACTTCGA 358
||||| || ||| | ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 348 TAGTAG-AG-GGG-CAACCATCTTCTACATGTACTATGTACTCAAGACTCTC-ACTTCGA 403
Query 359 TAGTTTGTGAAGGAACTGTTTTTTGTCTTGCCCTTGCTTACGTGGCTGATAATGTATCAG 418
||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||
Sbjct 404 TAGTTTGTGAAGGAAGTGTTCTTTGTCTTGCCCTTGCGTACGTGGCTGATAATGTACCAG 463
Query 419 AAAGGAGACGAGGCTCCGCGTTTGCAATACTTACCGGAATTACATCATGCGCATTCGTTT 478
|| ||||||||| |||||| |||| ||||||||||| ||||||||||| ||||||||||
Sbjct 464 AAGGGAGACGAGCCTCCGCATTTGGGATACTTACCGGGATTACATCATGTGCATTCGTTT 523
Query 479 GTGCCAATCTTTGTGCTCGATTTTTATCTATTG-CTGCGACATATCAGGTCGCAACAGGA 537
| |||||||||| |||||||||||||||||||| | | ||||| |||| | | || |
Sbjct 524 GCGCCAATCTTTCTGCTCGATTTTTATCTATTGGC-GTGACATTTCAG--C--AGCA--A 576
Query 538 ATGGGAATTTTATCATTGTTGTATATGAGGCTTTTCCTACCGGATTCGATCCGAGACAAT 597
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 -TGGGAATTTTATCAACGTTGTATATGAGGCTTTTCCTACCGGATTCGATCCGAGACAAT 635
Query 598 AGCCTCGGTGCTCCTATTGTTATAAGCGAGACATTGAGTTCCTC-TTTACTTGAAGATTG 656
|||||||||||||| |||||||||| |||| ||||||||| || |||||||||||||||
Sbjct 636 AGCCTCGGTGCTCCCATTGTTATAAATGAGAAATTGAGTTC-TCCTTTACTTGAAGATTG 694
Query 657 TCCTGGACATAGAAATAGAATATTTAGAGCAATTCATTCGGTACGTGAAATGGCATCTCT 716
||| |||||||||||||| |||||||||||||||| || ||||| ||||||||| |||||
Sbjct 695 TCCAGGACATAGAAATAGGATATTTAGAGCAATTCGTTTGGTACATGAAATGGCTTCTCT 754
Query 717 ATTGAGAAGTAGCGTTCCATTTTTTCAAGTTGCGATGGTATCATTCTGCAGTAGTCTTGC 776
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 755 AATGAGAAGTAGCGTTCCACTTTTTCAAGTTGCGATGGTATCATTCTTCAGTAGTCTTGC 814
Query 777 TGAGGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGAGGCAGGTCTACATGCTTCATCTATGTACTATTTAAAGGCCAAGTTTCACTTTAACAA 874
Query 837 AGACCAGTTTGCAGACTTGATGATCATA-TCAGGCGCAACCGGATCTATTTCACAGTTGC 895
|||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||
Sbjct 875 AGACCAGTTTGCAGACTTGATGATCATAGTT-GGCGCATCTGGATCTATTTCACAGTTGC 933
Query 896 TTTTTATGCCCATTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTT 955
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TCTTTATGCCCGTTCTAGTTCCTGCTTTAAAAGAGGAGAGACTGCTCTCAATTGGTCTTT 993
Query 956 TCTTTGGTGGTGCCCAT--GTTCCATA-TATG 984
|||||||| |||||||| ||||| || ||||
Sbjct 994 TCTTTGGTTGTGCCCATATGTTCC-TACTATG 1024
Score = 455 bits (246), Expect = 5e-127
Identities = 294/317 (93%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 973 GTTCCATATATGGCAGCCATATTTTCACTTTTCTCAGTATTTCC-ACATTCATGTATGCG 1031
|||||||||||||||||||||||| ||||||||||| ||||||| || || ||||||||
Sbjct 1044 GTTCCATATATGGCAGCCATATTTGCACTTTTCTCAATATTTCCTTCA-TCGTGTATGCG 1102
Query 1032 AAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGGATTATTTC 1091
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1103 AAGCATTGTCTCCAAACAAGTAGCATCATATGAACAGGGGAAAGCCCAAGGAATTATTTC 1162
Query 1092 AAGCATA-GATTCCCTTGCAAATGTCATTTCCCCGCTTGCATTTTCACCTCTAACAGATT 1150
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1163 AAGCATATG-TTCCCTTGCAAATGTCATTTCCCCGCTAGCATTTTCACCTCTAACAGATT 1221
Query 1151 GGTTTCTATCTGAAAGGGCTCCATTTAATTTCCTAGGGTTCAGTATAATGTGTGCGGGGT 1210
||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1222 GGTTTCTGTCTGAAAGAGCCCCATTTAATTTCCCAGGGTTCAGTATAATGTGTGCGGGAT 1281
Query 1211 TTATGATGACTATAGCTTTCATCCAAAGCCTCATGATCAGAGCAACAACTCCAATATCGG 1270
|| |||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
Sbjct 1282 TTGCCATGACTATAGCTTTCATCCAAAGCCTGATGATCAGAGCAGCAACACCAATATCAG 1341
Query 1271 ATATGGGATCTCCATAA 1287
||||||||||||||||
Sbjct 1342 TTATGGGATCTCCATAA 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5