BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331197
Length=2262
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47850.1 | Symbols: CCR4 | CRINKLY4 related 4 | chr5:1937870... 3048 0.0
> AT5G47850.1 | Symbols: CCR4 | CRINKLY4 related 4 | chr5:19378701-19381082
REVERSE LENGTH=2382
Length=2382
Score = 3048 bits (1650), Expect = 0.0
Identities = 2067/2270 (91%), Gaps = 22/2270 (1%)
Strand=Plus/Plus
Query 1 ATGGCATTTAGCATTTCAATCTCTCGTTGCTCct-ttcactttgtgtctttccttcttct 59
|||||| ||| ||| ||||||||| ||| ||||| || ||||||||||| ||||||||||
Sbjct 25 ATGGCACTTACCATCTCAATCTCTTGTTTCTCCTCTT-ACTTTGTGTCTCTCCTTCTTCT 83
Query 60 tcttctatcttccttctcttttgtttgcttttccctctccACTGTCTCCATCTCCCACAT 119
| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 84 TGTTCTATCTTCCTTCTCCTTTGTTTGCTTCTCCCTCTCCACCGTCTCCATCTCCCACAT 143
Query 120 CTCTAATCAGACTCTTGTATGTGCTCTCACCAACCACTCTTATCTCCAATGTTCCAGTTT 179
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 144 CTCTAATCAGACTCTTGTATGTGCTCTCAACAACCACTCTTATCTTCAATGTTCCAGTTT 203
Query 180 CCCTTTAAATTCTATTCGATTCTCTTTAACCGATAACCTCCGAAATCGTAGGTTTTCCGG 239
|||||||||||| |||| ||| |||||||||| |||||| |||||||| |||||||| ||
Sbjct 204 CCCTTTAAATTCGATTCCATTTTCTTTAACCGGTAACCTTCGAAATCGAAGGTTTTCGGG 263
Query 240 GGTTGTCTCCGGGAATGGGTTCGTGTGCGGGTTGAGAACG-GTGCTGGATTCCAACATTT 298
|||||| || ||||||||||| |||||||| |||| | || | |||||||||||||| ||
Sbjct 264 GGTTGTTTCAGGGAATGGGTTTGTGTGCGGATTGATATCGCG-GCTGGATTCCAACACTT 322
Query 299 CCACACTTCTTTGTTGGAGATTTTCTGTTAACGGAACCAGTTTGTTGCACAAAAGAATCT 358
|||||||||||||||||||||| |||||| | ||||| | | ||||||||||||||||||
Sbjct 323 CCACACTTCTTTGTTGGAGATTCTCTGTTGATGGAACTAATATGTTGCACAAAAGAATCT 382
Query 359 ACCACGGTCCTGAGATAGAAGAGTTAGAAGCCGGAAATTCCCGTATTTGTGGAGTTGAGA 418
|||||||||||||| | |||||| |||||||||| |||| ||| |||||||||||||| |
Sbjct 383 ACCACGGTCCTGAGCTCGAAGAGCTAGAAGCCGGGAATTTCCGCATTTGTGGAGTTGAAA 442
Query 419 GAGTCTCAAGGAGCCTCCGTTGCTGGCAACCGTTCTATCTACCACGGTCGGATAACTACA 478
||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||| |||
Sbjct 443 GAGTCTCAAGGCGCCTCCGTTGCTGGCAACCGTACTATCTGCCACGGCCGGATAATTACC 502
Query 479 GTTCCATTGCCTTGGGAGATAACTTTTTCTGTGGGCTATCTCAGCCACCTGGAAGGATCA 538
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 503 GTTCCATTGCCTTGGGAGATAATTTTTTCTGTGGGCTATCTCAGCCACCTGGTATGATCA 562
Query 539 GCTGTGAAGGAGAAGGTATATCCAAGGTACCGAGTGGAGACCGCTACATCGCCATCGCGG 598
| | | | ||||||||| |||| || ||||||||||||| ||||||||| || ||||
Sbjct 563 G-T-T----GTGAAGGTATAGCCAAAGTGCCGAGTGGAGACCACTACATCGCGATAGCGG 616
Query 599 CTGGATCAAGACAAGCGTGCGCGATCACGGTTGACAATGATGTCGAGTGCTGGGGACAAA 658
|||||||| |||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 617 CTGGATCACGACAAGCGTGTGCGATCACTGTTGACAATGATGTCGAGTGTTGGGGACAAA 676
Query 659 CGGAGTCGTTGCCACATGAAAAGTTTTTAGCATTGGCAGTTGGGGAAAACCGTAGCTGCG 718
| ||||| |||||| ||||||||| |||||| | || ||||||||| ||||| | ||||
Sbjct 677 CACAGTCGCTGCCACGTGAAAAGTTCTTAGCACTAGCGGTTGGGGAAGACCGTGGTTGCG 736
Query 719 GTATTAGATGGTCTAATGGAACTGTGGTGTGTTGGGGAAACAACAA-AAATTTCAGTTTG 777
|| |||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||
Sbjct 737 GTGTTAGATGGTCTAATGGAACTGTGGTGTGTTGGGGCAACAACAACAACTTT-AGTTTG 795
Query 778 CCTCAAA-GTCTTAAGGACATTCATTTCACATCAATATATGCTAAAGGGCAAATCTTTTG 836
||||||| | ||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 796 CCTCAAACG-CTTAAGGACATTCATTTTACATCAATATATGCTAAAGGGCCAATGTTTTG 854
Query 837 CGGTGTTGCCACAAAAAACTACACTCT-ATATTGCTGGGGAAATGAGAATTTTAAATCGG 895
|||||||||||||| ||| |||||||| || ||| ||||| ||||||||||||||||| |
Sbjct 855 CGGTGTTGCCACAAGAAATTACACTCTAAT-TTGTTGGGGGAATGAGAATTTTAAATCCG 913
Query 896 GTGTTTTCGCTCCGTTCCAAGGCCTAATTTCTCAAGTGGTAATGCCAGGACCGTGTAGAA 955
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GTGTTTTCACTCCATTCCAAGGCCTAATTTCTCAAGTGGTAATGCCAGGACCGTGTAGAA 973
Query 956 GAGAATGCCCTTACCGTCCATTGTCAGGTTCACAGTCATTATGCGGCAATGAATTGATGA 1015
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 974 GAGAATGCCCTTACCGTCCATTGTCAGGATCACAGTCCTTATGCGGCAATGAGTTGATGA 1033
Query 1016 TTTGTGATTTGAAAA-AAGAGGATGGAGAATTTCCAGATACAAAGGCACAAAACGCTAAG 1074
|||| |||||||||| || | |||||||| ||||| ||||| | ||| |||||| |||||
Sbjct 1034 TTTGCGATTTGAAAAGAA-ATGATGGAGAGTTTCCTGATACTAGGGCTCAAAACTCTAAG 1092
Query 1075 AACAAAACTTGGAGCAGAAGAAACATTGCGTTTCTTGTGGTTGGATGTGGTGGAACGTTT 1134
||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||||
Sbjct 1093 AACAAAACTTGGAGCAGAAGAAACATTGCGTTTCTAGTGGTCGGATGCGTTGGAACGTTT 1152
Query 1135 TCTTTGCTCCTTGTCATCAGTTTCTTGATCTTTAAAAGCCACTCTCGATGCCGTGTCCAT 1194
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1153 TCCTTGCTCCTTGTCATCAGTTTCTTGATCTTTAAAAGCCACTGTCGATGCCGTGTCCAT 1212
Query 1195 GACTCTGGACGTCTTGATGATACTAGGACAATAGACATGCCCAAGCTCGAGAAGAGGCTG 1254
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1213 GACTCTGGACGTCTTGATGATACTAGGACAATAGACATACCCAAGCTCGAGAAGAGGCTG 1272
Query 1255 AGCAGTCTAGTAAGTCTAGGGAA-CACTGGGCAGCTCATGGAGTTCTCAATTGACGAGCT 1313
||| ||||| |||| |||| || | |||||||||| |||||||||||||||||||||||
Sbjct 1273 TGCACTCTAGCAAGTTTAGGTAATC-CTGGGCAGCTAATGGAGTTCTCAATTGACGAGCT 1331
Query 1314 GGCTCTAGCCACAGATGGTTTCTCTGTCAGGTTTCAGCTCGGGATAGGCAGCTTCGGCTC 1373
||||||||||| ||||||||||||||| ||||||| || || |||||||||||||||||
Sbjct 1332 AGCTCTAGCCACGGATGGTTTCTCTGTCCGGTTTCATCTTGGTATAGGCAGCTTCGGCTC 1391
Query 1374 TGTTTACCAAGGTGTTTTATCGGACGGACGTCACGTGGCCATCAAACGAGCTGAGCTAAC 1433
|||||| ||||||||||| ||||| |||||||| || || ||||||||||||||||||||
Sbjct 1392 TGTTTATCAAGGTGTTTTGTCGGATGGACGTCATGTCGCAATCAAACGAGCTGAGCTAAC 1451
Query 1434 AAACCCTACATTGTCCGGGACCACAATGAGAAACCGACGAGCAGACAAGGACTCTGCGTT 1493
||| ||||||||||| ||||| || |||||| ||||||||||||| ||||| || |||||
Sbjct 1452 AAATCCTACATTGTCTGGGACAACGATGAGACACCGACGAGCAGATAAGGATTCAGCGTT 1511
Query 1494 CGTGAACGAGCTAGAGTCTATGTCGCGACTCAACCACAAAAATCTTGTTCGACTTCTTGG 1553
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1512 CGTGAACGAGCTAGAGTCTATGTCGCGGCTTAACCACAAAAATCTTGTTCGACTTCTGGG 1571
Query 1554 TTTCTACGAGGATGA-AGAAGAGAGGGTTTTGGTGTACGAGTACATGAAAAATGGATCTC 1612
|||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1572 TTTCTATGAGGAC-ACAGAAGAGAGGATTTTGGTGTACGAGTACATGAAAAATGGATCTC 1630
Query 1613 TCGCCGATCACCTTCATAACCCTCAATTTGACCCTCTTACGTGGCAAACACGCTTAATGA 1672
| |||||||||||||| || |||||||||||||||||| |||||||||||||||| ||||
Sbjct 1631 TAGCCGATCACCTTCACAATCCTCAATTTGACCCTCTTTCGTGGCAAACACGCTTGATGA 1690
Query 1673 TCGCGCTTGATGCCGCTCGTGGGATCCAATACCTCCATGAGTTTGTCGTGCCTCCGGTGA 1732
|||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1691 TCGCGCTTGACGCTGCTCGTGGGATCCAATACCTTCATGAGTTTATCGTGCCTCCGGTGA 1750
Query 1733 TTCATCGTGATATAAAGTCGTCAAACATACTTTTGGACGCCACATGGACAGCCAAAGTTT 1792
| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 TCCACCGTGACATAAAGTCATCAAACATACTTTTGGACGCCACATGGACAGCCAAAGTTT 1810
Query 1793 CGGATTTTGGCCTCTCTCAGATGGGTCCAACAGAAGAAGATGACGTGTCGCACCTCTCCT 1852
| ||||| ||||| ||||| ||||||||||| |||||||||||||| || || ||||| |
Sbjct 1811 CAGATTTCGGCCTATCTCAAATGGGTCCAACGGAAGAAGATGACGTCTCACATCTCTCTT 1870
Query 1853 TACACGCCGCCGGTACGTTGGGCTACATCGACCCGGAGTACTACAAGTTTCAACAGCTCA 1912
||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1871 TACACGCTGCCGGTACATTGGGATATATCGACCCGGAGTACTACAAGTTTCAACAGCTCA 1930
Query 1913 CAACTAAGAGTGATGTTTACAGCTTCGGCGTCGTATTGCTGGAGTTACTGTCCGGTCACA 1972
|||| ||||| |||||||||||||| ||||| || ||||||||||| ||||| |||||||
Sbjct 1931 CAACCAAGAGCGATGTTTACAGCTTTGGCGTGGTGTTGCTGGAGTTGCTGTCTGGTCACA 1990
Query 1973 AAGCGATACACAAGAACGAAGACGAAAACCCGAGAAACGTAGTGGAATATGTTGTACCAT 2032
||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1991 AAGCGATACACAATAACGAAGACGAAAACCCTAGAAACTTAGTGGAATATGTTGTACCAT 2050
Query 2033 ACATTTTGCTGGATGATGTTCATAGAGTACTTGACCAGAGGATTCCACCACCAACGCCAT 2092
|||||||||||||||| | ||||||| |||||||||||||||||||||| || || || |
Sbjct 2051 ACATTTTGCTGGATGAGGCTCATAGAATACTTGACCAGAGGATTCCACCGCCGACCCCTT 2110
Query 2093 ACGAAATCGAGGCGGTGGCTCATGTCGGATACTTGGCAGCGGAGTGTTTGATGCCGTGTA 2152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2111 ACGAAATCGAGGCGGTGGCTCATGTCGGATACTTGGCAGCGGAGTGTTTGATGCCGTGTA 2170
Query 2153 GCCGGAAAAGGCCATCAATGGCGGAGGTAGTGAGTAAACTTGAGAGTGCTTTGGCCGCTT 2212
| ||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 2171 GTCGGAAAAGGCCGTCAATGGTGGAGGTAGTCAGTAAACTAGAGAGTGCTTTGGCCGCTT 2230
Query 2213 GTTTGACGGCTCCAAAGACGGAGACCGTATCTCGATCAAACACTTATTAG 2262
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2231 GTTTGACGGCTCCAAAGACGGAGACCGTATCTCGATCAAACACTTATTAG 2280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112248418620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5