BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331197 Length=2262 Score E Sequences producing significant alignments: (Bits) Value AT5G47850.1 | Symbols: CCR4 | CRINKLY4 related 4 | chr5:1937870... 3048 0.0 > AT5G47850.1 | Symbols: CCR4 | CRINKLY4 related 4 | chr5:19378701-19381082 REVERSE LENGTH=2382 Length=2382 Score = 3048 bits (1650), Expect = 0.0 Identities = 2067/2270 (91%), Gaps = 22/2270 (1%) Strand=Plus/Plus Query 1 ATGGCATTTAGCATTTCAATCTCTCGTTGCTCct-ttcactttgtgtctttccttcttct 59 |||||| ||| ||| ||||||||| ||| ||||| || ||||||||||| |||||||||| Sbjct 25 ATGGCACTTACCATCTCAATCTCTTGTTTCTCCTCTT-ACTTTGTGTCTCTCCTTCTTCT 83 Query 60 tcttctatcttccttctcttttgtttgcttttccctctccACTGTCTCCATCTCCCACAT 119 | |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 84 TGTTCTATCTTCCTTCTCCTTTGTTTGCTTCTCCCTCTCCACCGTCTCCATCTCCCACAT 143 Query 120 CTCTAATCAGACTCTTGTATGTGCTCTCACCAACCACTCTTATCTCCAATGTTCCAGTTT 179 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 144 CTCTAATCAGACTCTTGTATGTGCTCTCAACAACCACTCTTATCTTCAATGTTCCAGTTT 203 Query 180 CCCTTTAAATTCTATTCGATTCTCTTTAACCGATAACCTCCGAAATCGTAGGTTTTCCGG 239 |||||||||||| |||| ||| |||||||||| |||||| |||||||| |||||||| || Sbjct 204 CCCTTTAAATTCGATTCCATTTTCTTTAACCGGTAACCTTCGAAATCGAAGGTTTTCGGG 263 Query 240 GGTTGTCTCCGGGAATGGGTTCGTGTGCGGGTTGAGAACG-GTGCTGGATTCCAACATTT 298 |||||| || ||||||||||| |||||||| |||| | || | |||||||||||||| || Sbjct 264 GGTTGTTTCAGGGAATGGGTTTGTGTGCGGATTGATATCGCG-GCTGGATTCCAACACTT 322 Query 299 CCACACTTCTTTGTTGGAGATTTTCTGTTAACGGAACCAGTTTGTTGCACAAAAGAATCT 358 |||||||||||||||||||||| |||||| | ||||| | | |||||||||||||||||| Sbjct 323 CCACACTTCTTTGTTGGAGATTCTCTGTTGATGGAACTAATATGTTGCACAAAAGAATCT 382 Query 359 ACCACGGTCCTGAGATAGAAGAGTTAGAAGCCGGAAATTCCCGTATTTGTGGAGTTGAGA 418 |||||||||||||| | |||||| |||||||||| |||| ||| |||||||||||||| | Sbjct 383 ACCACGGTCCTGAGCTCGAAGAGCTAGAAGCCGGGAATTTCCGCATTTGTGGAGTTGAAA 442 Query 419 GAGTCTCAAGGAGCCTCCGTTGCTGGCAACCGTTCTATCTACCACGGTCGGATAACTACA 478 ||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||| ||| Sbjct 443 GAGTCTCAAGGCGCCTCCGTTGCTGGCAACCGTACTATCTGCCACGGCCGGATAATTACC 502 Query 479 GTTCCATTGCCTTGGGAGATAACTTTTTCTGTGGGCTATCTCAGCCACCTGGAAGGATCA 538 |||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| Sbjct 503 GTTCCATTGCCTTGGGAGATAATTTTTTCTGTGGGCTATCTCAGCCACCTGGTATGATCA 562 Query 539 GCTGTGAAGGAGAAGGTATATCCAAGGTACCGAGTGGAGACCGCTACATCGCCATCGCGG 598 | | | | ||||||||| |||| || ||||||||||||| ||||||||| || |||| Sbjct 563 G-T-T----GTGAAGGTATAGCCAAAGTGCCGAGTGGAGACCACTACATCGCGATAGCGG 616 Query 599 CTGGATCAAGACAAGCGTGCGCGATCACGGTTGACAATGATGTCGAGTGCTGGGGACAAA 658 |||||||| |||||||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct 617 CTGGATCACGACAAGCGTGTGCGATCACTGTTGACAATGATGTCGAGTGTTGGGGACAAA 676 Query 659 CGGAGTCGTTGCCACATGAAAAGTTTTTAGCATTGGCAGTTGGGGAAAACCGTAGCTGCG 718 | ||||| |||||| ||||||||| |||||| | || ||||||||| ||||| | |||| Sbjct 677 CACAGTCGCTGCCACGTGAAAAGTTCTTAGCACTAGCGGTTGGGGAAGACCGTGGTTGCG 736 Query 719 GTATTAGATGGTCTAATGGAACTGTGGTGTGTTGGGGAAACAACAA-AAATTTCAGTTTG 777 || |||||||||||||||||||||||||||||||||| |||||||| || ||| |||||| Sbjct 737 GTGTTAGATGGTCTAATGGAACTGTGGTGTGTTGGGGCAACAACAACAACTTT-AGTTTG 795 Query 778 CCTCAAA-GTCTTAAGGACATTCATTTCACATCAATATATGCTAAAGGGCAAATCTTTTG 836 ||||||| | ||||||||||||||||| |||||||||||||||||||||| ||| ||||| Sbjct 796 CCTCAAACG-CTTAAGGACATTCATTTTACATCAATATATGCTAAAGGGCCAATGTTTTG 854 Query 837 CGGTGTTGCCACAAAAAACTACACTCT-ATATTGCTGGGGAAATGAGAATTTTAAATCGG 895 |||||||||||||| ||| |||||||| || ||| ||||| ||||||||||||||||| | Sbjct 855 CGGTGTTGCCACAAGAAATTACACTCTAAT-TTGTTGGGGGAATGAGAATTTTAAATCCG 913 Query 896 GTGTTTTCGCTCCGTTCCAAGGCCTAATTTCTCAAGTGGTAATGCCAGGACCGTGTAGAA 955 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 914 GTGTTTTCACTCCATTCCAAGGCCTAATTTCTCAAGTGGTAATGCCAGGACCGTGTAGAA 973 Query 956 GAGAATGCCCTTACCGTCCATTGTCAGGTTCACAGTCATTATGCGGCAATGAATTGATGA 1015 |||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 974 GAGAATGCCCTTACCGTCCATTGTCAGGATCACAGTCCTTATGCGGCAATGAGTTGATGA 1033 Query 1016 TTTGTGATTTGAAAA-AAGAGGATGGAGAATTTCCAGATACAAAGGCACAAAACGCTAAG 1074 |||| |||||||||| || | |||||||| ||||| ||||| | ||| |||||| ||||| Sbjct 1034 TTTGCGATTTGAAAAGAA-ATGATGGAGAGTTTCCTGATACTAGGGCTCAAAACTCTAAG 1092 Query 1075 AACAAAACTTGGAGCAGAAGAAACATTGCGTTTCTTGTGGTTGGATGTGGTGGAACGTTT 1134 ||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||| Sbjct 1093 AACAAAACTTGGAGCAGAAGAAACATTGCGTTTCTAGTGGTCGGATGCGTTGGAACGTTT 1152 Query 1135 TCTTTGCTCCTTGTCATCAGTTTCTTGATCTTTAAAAGCCACTCTCGATGCCGTGTCCAT 1194 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1153 TCCTTGCTCCTTGTCATCAGTTTCTTGATCTTTAAAAGCCACTGTCGATGCCGTGTCCAT 1212 Query 1195 GACTCTGGACGTCTTGATGATACTAGGACAATAGACATGCCCAAGCTCGAGAAGAGGCTG 1254 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1213 GACTCTGGACGTCTTGATGATACTAGGACAATAGACATACCCAAGCTCGAGAAGAGGCTG 1272 Query 1255 AGCAGTCTAGTAAGTCTAGGGAA-CACTGGGCAGCTCATGGAGTTCTCAATTGACGAGCT 1313 ||| ||||| |||| |||| || | |||||||||| ||||||||||||||||||||||| Sbjct 1273 TGCACTCTAGCAAGTTTAGGTAATC-CTGGGCAGCTAATGGAGTTCTCAATTGACGAGCT 1331 Query 1314 GGCTCTAGCCACAGATGGTTTCTCTGTCAGGTTTCAGCTCGGGATAGGCAGCTTCGGCTC 1373 ||||||||||| ||||||||||||||| ||||||| || || ||||||||||||||||| Sbjct 1332 AGCTCTAGCCACGGATGGTTTCTCTGTCCGGTTTCATCTTGGTATAGGCAGCTTCGGCTC 1391 Query 1374 TGTTTACCAAGGTGTTTTATCGGACGGACGTCACGTGGCCATCAAACGAGCTGAGCTAAC 1433 |||||| ||||||||||| ||||| |||||||| || || |||||||||||||||||||| Sbjct 1392 TGTTTATCAAGGTGTTTTGTCGGATGGACGTCATGTCGCAATCAAACGAGCTGAGCTAAC 1451 Query 1434 AAACCCTACATTGTCCGGGACCACAATGAGAAACCGACGAGCAGACAAGGACTCTGCGTT 1493 ||| ||||||||||| ||||| || |||||| ||||||||||||| ||||| || ||||| Sbjct 1452 AAATCCTACATTGTCTGGGACAACGATGAGACACCGACGAGCAGATAAGGATTCAGCGTT 1511 Query 1494 CGTGAACGAGCTAGAGTCTATGTCGCGACTCAACCACAAAAATCTTGTTCGACTTCTTGG 1553 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 1512 CGTGAACGAGCTAGAGTCTATGTCGCGGCTTAACCACAAAAATCTTGTTCGACTTCTGGG 1571 Query 1554 TTTCTACGAGGATGA-AGAAGAGAGGGTTTTGGTGTACGAGTACATGAAAAATGGATCTC 1612 |||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1572 TTTCTATGAGGAC-ACAGAAGAGAGGATTTTGGTGTACGAGTACATGAAAAATGGATCTC 1630 Query 1613 TCGCCGATCACCTTCATAACCCTCAATTTGACCCTCTTACGTGGCAAACACGCTTAATGA 1672 | |||||||||||||| || |||||||||||||||||| |||||||||||||||| |||| Sbjct 1631 TAGCCGATCACCTTCACAATCCTCAATTTGACCCTCTTTCGTGGCAAACACGCTTGATGA 1690 Query 1673 TCGCGCTTGATGCCGCTCGTGGGATCCAATACCTCCATGAGTTTGTCGTGCCTCCGGTGA 1732 |||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 1691 TCGCGCTTGACGCTGCTCGTGGGATCCAATACCTTCATGAGTTTATCGTGCCTCCGGTGA 1750 Query 1733 TTCATCGTGATATAAAGTCGTCAAACATACTTTTGGACGCCACATGGACAGCCAAAGTTT 1792 | || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1751 TCCACCGTGACATAAAGTCATCAAACATACTTTTGGACGCCACATGGACAGCCAAAGTTT 1810 Query 1793 CGGATTTTGGCCTCTCTCAGATGGGTCCAACAGAAGAAGATGACGTGTCGCACCTCTCCT 1852 | ||||| ||||| ||||| ||||||||||| |||||||||||||| || || ||||| | Sbjct 1811 CAGATTTCGGCCTATCTCAAATGGGTCCAACGGAAGAAGATGACGTCTCACATCTCTCTT 1870 Query 1853 TACACGCCGCCGGTACGTTGGGCTACATCGACCCGGAGTACTACAAGTTTCAACAGCTCA 1912 ||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 1871 TACACGCTGCCGGTACATTGGGATATATCGACCCGGAGTACTACAAGTTTCAACAGCTCA 1930 Query 1913 CAACTAAGAGTGATGTTTACAGCTTCGGCGTCGTATTGCTGGAGTTACTGTCCGGTCACA 1972 |||| ||||| |||||||||||||| ||||| || ||||||||||| ||||| ||||||| Sbjct 1931 CAACCAAGAGCGATGTTTACAGCTTTGGCGTGGTGTTGCTGGAGTTGCTGTCTGGTCACA 1990 Query 1973 AAGCGATACACAAGAACGAAGACGAAAACCCGAGAAACGTAGTGGAATATGTTGTACCAT 2032 ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 1991 AAGCGATACACAATAACGAAGACGAAAACCCTAGAAACTTAGTGGAATATGTTGTACCAT 2050 Query 2033 ACATTTTGCTGGATGATGTTCATAGAGTACTTGACCAGAGGATTCCACCACCAACGCCAT 2092 |||||||||||||||| | ||||||| |||||||||||||||||||||| || || || | Sbjct 2051 ACATTTTGCTGGATGAGGCTCATAGAATACTTGACCAGAGGATTCCACCGCCGACCCCTT 2110 Query 2093 ACGAAATCGAGGCGGTGGCTCATGTCGGATACTTGGCAGCGGAGTGTTTGATGCCGTGTA 2152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2111 ACGAAATCGAGGCGGTGGCTCATGTCGGATACTTGGCAGCGGAGTGTTTGATGCCGTGTA 2170 Query 2153 GCCGGAAAAGGCCATCAATGGCGGAGGTAGTGAGTAAACTTGAGAGTGCTTTGGCCGCTT 2212 | ||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 2171 GTCGGAAAAGGCCGTCAATGGTGGAGGTAGTCAGTAAACTAGAGAGTGCTTTGGCCGCTT 2230 Query 2213 GTTTGACGGCTCCAAAGACGGAGACCGTATCTCGATCAAACACTTATTAG 2262 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2231 GTTTGACGGCTCCAAAGACGGAGACCGTATCTCGATCAAACACTTATTAG 2280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 112248418620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5