BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331219 Length=402 Score E Sequences producing significant alignments: (Bits) Value AT3G24060.1 | Symbols: | Plant self-incompatibility protein S1... 560 3e-159 > AT3G24060.1 | Symbols: | Plant self-incompatibility protein S1 family | chr3:8689589-8690032 REVERSE LENGTH=444 Length=444 Score = 560 bits (303), Expect = 3e-159 Identities = 375/409 (92%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 1 ATGCTTATTATCACCTCCTTAACAATCATGATCACGTTAATGCTTCAACCACAAACTATG 60 |||||||| || ||||||||| ||||| ||||||| |||||||| |||||||||||| Sbjct 37 ATGCTTATCGCCATCTCCTTAACGATCATCTTCACGTTGATGCTTCAGCCACAAACTATG 96 Query 61 TTACTTGGAGAGGAATACGACGTGCGTGTGATCAACAACTTCAGAGACAACTCGTCTCTC 120 || || ||||| |||| |||||||||||||||||||| ||||||||||||||| |||||| Sbjct 97 TTTCTAGGAGAAGAATTCGACGTGCGTGTGATCAACAGCTTCAGAGACAACTCTTCTCTC 156 Query 121 CCTCTAGTGATCTGGTGCACTTCGCCCCAAGGAGATCTCGGTGGTCGTGCACTTCAAGAA 180 |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 157 CCTCTAGTTATCTGGTGCACTTCGCCGCAAGGAGATCTCGGTGGTCGTGCGCTTCAAGAA 216 Query 181 GGAGACGACTTCGAATGGACGGTCAAGATCGATTTGTGGTC------GGCAGAGTACACA 234 || || |||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 217 GGTGATGACTTCGAATGGACGGCCAAGATCGATTTGTGGTCATGGATGGCAGAGTACACA 276 Query 235 TGTACAATGAAGTGGAATACAAAGAGG-AAGAGGTTCGAGGCGTTTAAGGTTTCTAGAGA 293 ||||||||||||||| || |||||||| || | ||||||||||||||||||||||||||| Sbjct 277 TGTACAATGAAGTGGGATTCAAAGAGGAAACA-GTTCGAGGCGTTTAAGGTTTCTAGAGA 335 Query 294 CAGCAATAGATGTGGATCTACTAAGAAGTGTTCTTGGTCCGTTAGAGAAGATGGTTTTTA 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 336 CAGCAATAGATGTGGATCTACTAAGAAGTGTTCTTGGTCCGTTAGAGAAGATGGATTTTA 395 Query 354 TTTTAGTAATGATGAGGTTTATTGGACCAAGGATTTTTCTTGGTTATAA 402 |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 396 TTTTAGTAGTGATGAGGTTTATTGGACCAAGGATTTTTCTTGGTTATAA 444 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19001209122 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5