BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331219

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24060.1 | Symbols:  | Plant self-incompatibility protein S1...   560    3e-159


> AT3G24060.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:8689589-8690032 REVERSE LENGTH=444
Length=444

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 375/409 (92%), Gaps = 8/409 (2%)
 Strand=Plus/Plus

Query  1    ATGCTTATTATCACCTCCTTAACAATCATGATCACGTTAATGCTTCAACCACAAACTATG  60
            ||||||||   || ||||||||| |||||  ||||||| |||||||| ||||||||||||
Sbjct  37   ATGCTTATCGCCATCTCCTTAACGATCATCTTCACGTTGATGCTTCAGCCACAAACTATG  96

Query  61   TTACTTGGAGAGGAATACGACGTGCGTGTGATCAACAACTTCAGAGACAACTCGTCTCTC  120
            || || ||||| |||| |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct  97   TTTCTAGGAGAAGAATTCGACGTGCGTGTGATCAACAGCTTCAGAGACAACTCTTCTCTC  156

Query  121  CCTCTAGTGATCTGGTGCACTTCGCCCCAAGGAGATCTCGGTGGTCGTGCACTTCAAGAA  180
            |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  157  CCTCTAGTTATCTGGTGCACTTCGCCGCAAGGAGATCTCGGTGGTCGTGCGCTTCAAGAA  216

Query  181  GGAGACGACTTCGAATGGACGGTCAAGATCGATTTGTGGTC------GGCAGAGTACACA  234
            || || |||||||||||||||| ||||||||||||||||||      |||||||||||||
Sbjct  217  GGTGATGACTTCGAATGGACGGCCAAGATCGATTTGTGGTCATGGATGGCAGAGTACACA  276

Query  235  TGTACAATGAAGTGGAATACAAAGAGG-AAGAGGTTCGAGGCGTTTAAGGTTTCTAGAGA  293
            ||||||||||||||| || |||||||| || | |||||||||||||||||||||||||||
Sbjct  277  TGTACAATGAAGTGGGATTCAAAGAGGAAACA-GTTCGAGGCGTTTAAGGTTTCTAGAGA  335

Query  294  CAGCAATAGATGTGGATCTACTAAGAAGTGTTCTTGGTCCGTTAGAGAAGATGGTTTTTA  353
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  336  CAGCAATAGATGTGGATCTACTAAGAAGTGTTCTTGGTCCGTTAGAGAAGATGGATTTTA  395

Query  354  TTTTAGTAATGATGAGGTTTATTGGACCAAGGATTTTTCTTGGTTATAA  402
            |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  396  TTTTAGTAGTGATGAGGTTTATTGGACCAAGGATTTTTCTTGGTTATAA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5