BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331222

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48090.1 | Symbols: ELP1 | EDM2-like protein1 | chr5:1948416...   401    3e-111


> AT5G48090.1 | Symbols: ELP1 | EDM2-like protein1 | chr5:19484165-19488657 
FORWARD LENGTH=2781
Length=2781

 Score =  401 bits (217),  Expect = 3e-111
 Identities = 355/417 (85%), Gaps = 28/417 (7%)
 Strand=Plus/Plus

Query  1    ATGGAGTGGTCAGAAGAAGAAGGCGAGATTCTACCTGA-TTCTGTTGATGAGTACTATTT  59
            ||||||||||| ||||||||||| |||||||||||||| ||| |||||| | ||||||||
Sbjct  1    ATGGAGTGGTCTGAAGAAGAAGGAGAGATTCTACCTGATTTC-GTTGATAACTACTATTT  59

Query  60   CGTTGATCAAAGTGACACA-CCTGTCAAGTTTTGTGATGTGCCAC-----T--CA-A-CG  109
            | ||||||||||||| | | | |||||||||||||||| ||||||     |   | | ||
Sbjct  60   CATTGATCAAAGTGA-AGAGCTTGTCAAGTTTTGTGATTTGCCACTGAAATGGAATAGCG  118

Query  110  TTGA-T-TCA--ACTGATAGCTCGGGATCGCCTGTGTTTTTGCGTGGTAACATAAACTCC  165
            |||| | | |  | ||||||||| |||| | |||||||| |||||||||| ||  |||| 
Sbjct  119  TTGATTATGATGA-TGATAGCTCAGGATTGTCTGTGTTTCTGCGTGGTAATATTGACTCT  177

Query  166  GGAGACGAGTCATTTTCTAAGCTTGTCAAAGGTTGGAACTTTGAAC--T-TTCTGTTGAT  222
            |||||||||||||| ||||||||||| ||||||||||||||| | |  | ||||||||||
Sbjct  178  GGAGACGAGTCATTCTCTAAGCTTGTTAAAGGTTGGAACTTTTATCTTTCTTCTGTTGAT  237

Query  223  GAACATCCCAAGATCGAGGTGCTTCTTCATGGGATGATGCATTGGATAACTCTACAAAGC  282
            ||||||||||| || ||||| ||||| |||||| |  |||||||||||||||||||||||
Sbjct  238  GAACATCCCAAAATTGAGGTTCTTCTACATGGG-T--TGCATTGGATAACTCTACAAAGC  294

Query  283  CCTAGAAAAAGTTATGA-AGCTTTGATTAGAACAACTCTGGTTACTCTTCAGTTTCTTCA  341
            || ||||| |||||||| | ||||||| ||||||| ||||||||||||||||||||||||
Sbjct  295  CCAAGAAAGAGTTATGAGA-CTTTGATAAGAACAAGTCTGGTTACTCTTCAGTTTCTTCA  353

Query  342  CTTTGTCAAAAGGAATCCGGATGCTT-CAAGTGATGATGTGTGGAATAGTTTACAGA  397
            |||||| |||||| ||||||||| || |||||| ||||||||||| |||||||||||
Sbjct  354  CTTTGTTAAAAGGGATCCGGATG-TTGCAAGTGGTGATGTGTGGAGTAGTTTACAGA  409



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5