BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331222 Length=582 Score E Sequences producing significant alignments: (Bits) Value AT5G48090.1 | Symbols: ELP1 | EDM2-like protein1 | chr5:1948416... 401 3e-111 > AT5G48090.1 | Symbols: ELP1 | EDM2-like protein1 | chr5:19484165-19488657 FORWARD LENGTH=2781 Length=2781 Score = 401 bits (217), Expect = 3e-111 Identities = 355/417 (85%), Gaps = 28/417 (7%) Strand=Plus/Plus Query 1 ATGGAGTGGTCAGAAGAAGAAGGCGAGATTCTACCTGA-TTCTGTTGATGAGTACTATTT 59 ||||||||||| ||||||||||| |||||||||||||| ||| |||||| | |||||||| Sbjct 1 ATGGAGTGGTCTGAAGAAGAAGGAGAGATTCTACCTGATTTC-GTTGATAACTACTATTT 59 Query 60 CGTTGATCAAAGTGACACA-CCTGTCAAGTTTTGTGATGTGCCAC-----T--CA-A-CG 109 | ||||||||||||| | | | |||||||||||||||| |||||| | | | || Sbjct 60 CATTGATCAAAGTGA-AGAGCTTGTCAAGTTTTGTGATTTGCCACTGAAATGGAATAGCG 118 Query 110 TTGA-T-TCA--ACTGATAGCTCGGGATCGCCTGTGTTTTTGCGTGGTAACATAAACTCC 165 |||| | | | | ||||||||| |||| | |||||||| |||||||||| || |||| Sbjct 119 TTGATTATGATGA-TGATAGCTCAGGATTGTCTGTGTTTCTGCGTGGTAATATTGACTCT 177 Query 166 GGAGACGAGTCATTTTCTAAGCTTGTCAAAGGTTGGAACTTTGAAC--T-TTCTGTTGAT 222 |||||||||||||| ||||||||||| ||||||||||||||| | | | |||||||||| Sbjct 178 GGAGACGAGTCATTCTCTAAGCTTGTTAAAGGTTGGAACTTTTATCTTTCTTCTGTTGAT 237 Query 223 GAACATCCCAAGATCGAGGTGCTTCTTCATGGGATGATGCATTGGATAACTCTACAAAGC 282 ||||||||||| || ||||| ||||| |||||| | ||||||||||||||||||||||| Sbjct 238 GAACATCCCAAAATTGAGGTTCTTCTACATGGG-T--TGCATTGGATAACTCTACAAAGC 294 Query 283 CCTAGAAAAAGTTATGA-AGCTTTGATTAGAACAACTCTGGTTACTCTTCAGTTTCTTCA 341 || ||||| |||||||| | ||||||| ||||||| |||||||||||||||||||||||| Sbjct 295 CCAAGAAAGAGTTATGAGA-CTTTGATAAGAACAAGTCTGGTTACTCTTCAGTTTCTTCA 353 Query 342 CTTTGTCAAAAGGAATCCGGATGCTT-CAAGTGATGATGTGTGGAATAGTTTACAGA 397 |||||| |||||| ||||||||| || |||||| ||||||||||| ||||||||||| Sbjct 354 CTTTGTTAAAAGGGATCCGGATG-TTGCAAGTGGTGATGTGTGGAGTAGTTTACAGA 409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27980419879 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5