BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331241

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48335.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   551    2e-156


> AT5G48335.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT3G07580.1); Has 35333 
Blast hits to 34131 proteins in 2444 species: Archae - 798; 
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; 
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | 
chr5:19587993-19589606 FORWARD LENGTH=675
Length=675

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 330/345 (96%), Gaps = 4/345 (1%)
 Strand=Plus/Plus

Query  1    ATGCAGAACCCAAACTCATCATCTTCTA-TGGTGGATTCAACCTCCGCACCTAAACGATA  59
            ||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct  91   ATGCAGAACCCGAACTCATCATCTTC-ACTGGTGGATTCAACCTCCGCCCCTAAACGATA  149

Query  60   CACTCCACCTAACCAAAGGAACCGTTCTTCGAACCGGAGGAGATCAAGAGGAAGCTTCCA  119
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  150  CACTCCACCTAACCAAAGGAACCGTTCCTCGAACCGGAGGAGATCAAGAGGAAGCTTCCA  209

Query  120  TAGTAATGAGGGCGAGAGCAGTCAGCCTGTTGCTGTTGGTTTCCAGAGGGAAAACTCTTC  179
            |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  210  TAGTAATGAGGGAGAGAGCAGTCAGTCTGTTGCTGTTGGTTTCCAGAGGGAAAACTCTTC  269

Query  180  TCCAAAGATTATATCTCTAGAGGGTTGCTCTAGGAGTGAAGCTTTTCAGCTTCTCAGTGA  239
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct  270  TCCAAAGATTATATCAGTAGAGGGTTGCTCTAGGAGTGAAGCTTTTCAGCTTCTCAGTGA  329

Query  240  TCGTTGGGCAGCTGCAATGCATCTATACAATGACCC-ATCTATTGATTTGTCTGAAAGAC  298
            ||||||| |||||||||||||||||||||||||||| |  | ||||||||||||||||||
Sbjct  330  TCGTTGGACAGCTGCAATGCATCTATACAATGACCCTAG-TGTTGATTTGTCTGAAAGAC  388

Query  299  CGATGATGTATTATGGTGGGGATGTGTGGGGTAAACTGCCTCACT  343
            |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  389  CGATGATGTACTATGGTGGGGATGTGTGGGGTAAACTGCCTCACT  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5