BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331244

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48350.1 | Symbols:  | Polynucleotidyl transferase, ribonucl...   394    5e-109


> AT5G48350.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease 
H-like superfamily protein | chr5:19593217-19594441 FORWARD 
LENGTH=1139
Length=1139

 Score =  394 bits (213),  Expect = 5e-109
 Identities = 231/240 (96%), Gaps = 0/240 (0%)
 Strand=Plus/Plus

Query  288  GCTTGAGAGTGAGTTTGGTTTGACCTGCAAGAATGTTGTTGAGATTGGACCCGCCACATG  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  608  GCTTGAGAGTGAGTTTGGTTTGACCTGCAAGAATGTTGTTGAGATTGGACCCGCCACATG  667

Query  348  GAAGCTGACCAATATGACGGCCGATGTGAAATTTAGGCTCAGTACTATTGTTTCGACTGA  407
            ||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct  668  GAATCTGACCAATATGACGACCGATGTGAAATTTAGGATCAGTGCTATTGTTTCGACTGA  727

Query  408  GAGACCAACAAATGCCGTACTTGACGACTGGGAAAAATTTGTTCTCAATAAGAACCAGAT  467
            ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct  728  GAGACCATCAAATGCCGTACTTGAGGACTGGGAGAAATTTGTTCTCAATAAGAACCAGAT  787

Query  468  AAAGCTTGCAGCCTCCAATGCATACTTTGCTTTTGGCATTGGGAACATTCTGTTGGATGT  527
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  788  CAAGCTTGCAGCCTCCAATGCATACTTTGCTTTTGGCATTGGGAACATTTTGTTGGATGT  847


 Score =  364 bits (197),  Expect = 4e-100
 Identities = 231/248 (93%), Gaps = 0/248 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTTCGTCCATTGTTAAAATTGGAATAGATAGCATCAAAACAACGGTAACTGAAAAA  60
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  264  ATGTCTTCTTCCATTGTTAAAATCGGAATAGATAGCATCAAAACAACGGTAACTGAAAAA  323

Query  61   GAGAGCGATAGCAACCGTCTCGTGAAGACATTCTTGTCCAACAAAAACAACAGGAAGAAG  120
            ||| | |||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  324  GAGCGAGATATCAACCGTCTTGTGAAGACATTCTTGTCCAACAAAAACAACAGGAAGAAG  383

Query  121  ATAATTGGTCTTGACACCGAACACGTGCAAAAGGGAAGAAATCTAAATAAGACTGTCTTG  180
            || ||||||||||| |||||||  ||||||||||||||||| ||||||||||| ||||||
Sbjct  384  ATCATTGGTCTTGATACCGAACGGGTGCAAAAGGGAAGAAAGCTAAATAAGACCGTCTTG  443

Query  181  TTGCAGCTCTGTGATGGAGACAATTGTCTAATAGTACAACTTCCCAATGAAGGTGAAGGT  240
            ||||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||| |
Sbjct  444  TTGCAGCTCTGCGATGGTGACAATTGTCTAATAGTACAACTTCCCGATGAAGATGAAGAT  503

Query  241  GAAGGTGA  248
            ||||||||
Sbjct  504  GAAGGTGA  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5