BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331248
Length=4005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48390.1 | Symbols: ATZIP4 | Tetratricopeptide repeat (TPR)-... 2206 0.0
AT5G48385.1 | Symbols: | FRIGIDA-like protein | chr5:19608560-... 1853 0.0
> AT5G48390.1 | Symbols: ATZIP4 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19612062-19615383 FORWARD
LENGTH=2847
Length=2847
Score = 2206 bits (1194), Expect = 0.0
Identities = 1315/1375 (96%), Gaps = 2/1375 (0%)
Strand=Plus/Plus
Query 1471 AGACAATCCCTAACTCGACTGAGTCAACTCGCTCCTTTTCCCGATAACTCCTTCAAGCTC 1530
||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 AGACAATTCCTAACTCGGCTGAGTCAACTTGCTCCTTTTCCCGATAACTCCTTCAAGCTT 238
Query 1531 ACCATATGGAAGCTTAGCTTTCGCCTCTGGAACGCTTGTGTTGATCTCTCTAACGCCGCC 1590
||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 239 ACCATATGGAAACTCAGCTTTCGCCTCTGGAATGCTTGTGTTGATCTCGCTAACGCCGCC 298
Query 1591 TCTCTACAATCCTCTTCAACCTCCGCTGAGAGCATCGCGAATCTCAGGCATGTTGCCGCC 1650
||||| |||||||||| ||||||||| |||| ||| ||||||||||| ||||||||||||
Sbjct 299 TCTCTCCAATCCTCTTTAACCTCCGCCGAGAACATTGCGAATCTCAGACATGTTGCCGCC 358
Query 1651 GATATGCTATTTCTCGCTAAGGATGTTACCGGAGTTCCATCTCCGACGATTAAGTCTTCT 1710
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 359 GATATGCTTTTTCTCGCTAAGGACGTTACCGGTGTTCCATCTCCGACGATTAAGTCCTCT 418
Query 1711 CTCTTCTACTATAGGACCGGTCTCGTTTATCACAGTCTCAAGAAATTTGATCTCGCCTCC 1770
|| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 419 CTATTCTACTATAAGACCGGTCTTGTTTATCACAGTCTCAAGAAATTCGATCTCGCCTCC 478
Query 1771 GGTTGCTTTGAGAGAGCAACCGAAATCGTTTCGAAAATCGATATCGCGAAAATTTCCGAT 1830
| |||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 479 GATTGCTTCGAGAGAGCCACCGAAATCGTCTCGAAAATTGATATCGCGAAAATTTCCGAT 538
Query 1831 GCCGGAGAAAAGAAATTGTTTCTGGATCTAAACCTAGCTAGATCTCGAACTGCCTGGGAA 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GCCGGAGAAAAGAAATTGTTTCTGGATCTAAACCTAGCTAGATCTCGAACTGCCTGGGAA 598
Query 1891 ATTTCTGATAGGAATTTAGCTGTAACGTTGCTCAATCGAGCGAAGAATATGTTGTTTGGT 1950
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 599 ATTTCTGATAGGAATTTAGCTGTAACGTTGCTTAATCGGGCGAAGAATTTGTTGTTTGGT 658
Query 1951 TCACCGGATCATTACAAATCGCTCTCAAATCAATTCCTTGCGTTTGGTAAAAGCTCTTTG 2010
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCACCGGATCACTACAAATCGCTCTCAAATCAATTCCTTGCGTTTGGTAAAAGCTCTTTG 718
Query 2011 TCTAGAGATGACGACGATTGCAGTCTAAACGATGCTCTTAGGCTCATGAATGAAGCATTG 2070
||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||| |||
Sbjct 719 TCTAGAGGTGACGACGATTGCAGTCTAAACGACGCTCTTAGGTTAATGAATGAAGCGTTG 778
Query 2071 GATCTTTGTGAGAAGGGATTAGGTACTGCAAAAACTCGGGAAGATACCATGGAGTTCACG 2130
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct 779 GATCTTTGTGAGAAGGGATTAGGTACAGCAAAAACTCGGGAAGATACTACGGAGTTCACG 838
Query 2131 GGGATGAGAATCAAAACTCTGCGTTTCATATCAGCAGTGCATTTGCAGAAGGGAGAGTTC 2190
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCCATGAGAATCAAAACTCTGCGTTTCATATCAGCAGTGCATTTGCAGAAGGGAGAGTTC 898
Query 2191 GAGAATGTGATCAAATGTGTGAAAGTTCTCAGGAATGGAGGAAATGGTAGTGATGGAGCA 2250
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 899 GAGAATGTGATAAAATGTGTGAAAGTTCTAAGGAATGGAGGAAATGGTAGTGATGGAGCT 958
Query 2251 GATCAACATGCTTCATTACCTGTGTTGGCGATGAAGGCTTGGTTAGGGCTTGGGAGACAT 2310
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 959 GATCAACATGCTTCATTACCTGTGTTGGCGATGAAGGCTTGGTTAGGACTTGGGAGGCAT 1018
Query 2311 AGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTGGGAAACAATGATATTCCAGAGGCTGTG 2370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 AGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTGGGAAACAATGATATTCCAGAGGCAGTG 1078
Query 2371 TGGGTATCTGCTGTGGAAGCATATTTTGAGGTGG-TGGGAACTGCTGGAGCAGAAACTGC 2429
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1079 TGGGTATCTGCTGTGGAAGCATATTTTGAGGTGGTTGGG-ACTGCTGGAGCAGAAACTGC 1137
Query 2430 AAAGGGTGTGTTCTTAGGTTTGCTGGGAAGGTGTCATGTTAGTGCAAAGGCGGCGCTTAG 2489
||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 1138 AAAGGGTGTGTTCTTAGGTCTGCTGGGAAGGTGTCATGTCAGTGCAAAGGCGGCACTTAG 1197
Query 2490 AGTGGCTCATCGGGTGCTTGGTGAGAGTAGGGGAGGTGATAATGGTTCGAGAATTAGGGC 2549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGTGGCTCATCGGGTGCTTGGTGAGAGTAGGGGAGGTGATAATGGTTCGAGAATTAGGGC 1257
Query 2550 AAATGTTGTGGCTCAGCTCGTATCAGACGAGAGAGTTGTTGCTCTCTTTGCTGGTGAAGC 2609
|| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 1258 GAACGTTGTGGCTCAGCTCGTGTCAGATGAGAGAGTTGTTGCTCTCTTTGCTAGTGAAGC 1317
Query 2610 AGTGACCAAGGAGAGGAAGGCAATACATTCTGTTCTCTGGAACAGTGCTTCAGATCATTT 2669
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TGTGACTAAGGAGAGGAAGGCAATACATTCTGTTCTCTGGAACAGTGCTTCAGATCATTT 1377
Query 2670 CCGTGCTAAAGATTATGAGACAAGTGCAGAGATGTTTGAGAAGTCAATGCTCTATATTCC 2729
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1378 CCGTGCTAAAGATTATGAGACAAGTGCAGAGATGTTTGAGAAATCAATGCTCTATATTCC 1437
Query 2730 ACATGATATAGAAAATAGAGTTTTCAGGGCCAAAGGCTTCAGGGTTTTGTGTCTTTGCTA 2789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ACATGATATAGAAAATAGAGTTTTCAGGGCCAAAGGCTTCAGGGTTTTGTGTCTTTGCTA 1497
Query 2790 CCTTGGGCTCTCTCAGCTGGATCGAGCTCTTGAATACATAGAAGAAGCTGAAAAG 2844
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CCTTGGGCTCTCTCAGCTGGATCGAGCTCTTGAATACATAGAAGAAGCTGAAAAG 1552
Score = 1733 bits (938), Expect = 0.0
Identities = 1078/1143 (94%), Gaps = 20/1143 (2%)
Strand=Plus/Plus
Query 2879 CGCATGAAGCTATTTCTTGCCAAGCGCTTCCAGTTGCTGTTGCTTCTCTTTCCAAGTTTC 2938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 CGCATGAAGCTATTTCTTGCCAAGCGCTTCCAGTTGCTGTTGCTTCTCTTTCCAAGTTTC 1748
Query 2939 TCAGTTTCTATATCTCTGGAAAAACAATGCCAACCACAGAGGTCGTGGTCTTTCGTACCT 2998
|||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 1749 TCAGTTTCTATATCTCAGGAAAAAAAATGCCAACCACAGAGGTTGTGGTCTTCCGTACCT 1808
Query 2999 TAATCACTATATTGACTCAAGACATTGGCAGCGAAACCGAAGCTCTTAACTTTATGTTGC 3058
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 TAGTCACTATATTGACTCAAGACATTGGCAGCGAAACCGAAGCTCTTAACTTTATGTTGC 1868
Query 3059 AAGCTCAGAGCAGGGCATCTAAGCTTGGGACAGAGTGTTTCTTTGGATCAGGAGAGACTG 3118
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1869 AAGCTCAGAGCAGGGCTTCTAAGCTTGGGACAGAGTGTTTCTTTGGATTAGGAGAGACTG 1928
Query 3119 GAAAGCGAGAACGGAACTGGTTTGCTGTAACTTGCTGGAACCTTGGGTCAAGATGTGGGA 3178
|||||||||||| ||| |||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1929 GAAAGCGAGAACAGAATTGGTTTGCTGCGACTTGCTGGAATCTTGGGTCAAGGTGTGGGA 1988
Query 3179 ATGCAAAGAAGTATGAGCTCTGTGGTGAATTCTTGAGGCTGGCATCGGAATTTTACAGCT 3238
| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1989 AGGAAAAGAAGTATGAGCTCTGTGGTGAATTCTTGAGGCTGGCATCTGAATTTTATGGCT 2048
Query 3239 ATATGATGGATACTGATGAGTCTGGAGAAAACAAAATGATGATTTGCAGGTCCATAATAC 3298
|||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2049 ATAT-A--GATACTGATGAGTCTGGAGAAGACAAACTGATGATTTGCAGGTCCATAATAC 2105
Query 3299 TAAATGTCACCGCTATGATTGCTTTGGAGAAGCAAAACAAGAGCGCACTGACTGAAACTC 3358
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 2106 TAAGTGTCACCGCTATGATTGCTTTGGAGAAGCAAACCAAGAGCGCACTGACTGAAACCC 2165
Query 3359 AAGTGAAACTTGCTGCAGAATTG--C-T-----C-------ATTATGTCTTCTTCGCTCT 3403
||||||||||||||||||||||| | | | |||||||||||||||||||
Sbjct 2166 AAGTGAAACTTGCTGCAGAATTGCTCGTGAGAGCAGGAAAGATTATGTCTTCTTCGCTCT 2225
Query 3404 CAAATGGTAAAGATTGTATCATGGAGCCAGAACTCAACTTCATGTACACCTTACTTGCGT 3463
|| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 2226 CAGATGGTAAAGATTGTATCATGGAGCCAGAACTCATCTTTATGTACACTTTACTTGCGT 2285
Query 3464 ATGACATACACGGAAGGCTCAACAATTCGGCATTCCAGTTACTTGTGGTAAAGACATTTG 3523
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2286 ATGACATACACGGAAGGCTCAACAATTCGGCATTCCAGTTACTTGTGGTAAAGACGTTTG 2345
Query 3524 CTGGTTCCAAGTCTTGTCATTACAATTATCTTCTCCAACTTGGAATTTTCGCCTCTCAAA 3583
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2346 CTGGTTCCAAGTCTTGTCATTACAACTATCTTCTCCAACTTGGAATTTTCGCCTCTCAAA 2405
Query 3584 GCCCTCAGTCCAACCCAGACGTGTCAACATTTGCTCTTAACGAATGCCTATCCGCTCTGA 3643
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2406 GCCCTCAGTCCAACCCGGACGTGTCAACATTTGCTCTTAACGAATGCCTATCCGCTCTGA 2465
Query 3644 TCGCATCCGCTTCACCAGATTACCCAACCATAGCTCTCATAATCAGGAAGCTGATCTTCA 3703
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2466 TCGCATCTGCTTCACCAGAGTACCCAACCATAGCTCTTATAATCAGGAAGCTGATCTCCA 2525
Query 3704 TATCCAGCATCCACAAAGGCGATACAAACGATGAAGAAGCAATTTTAAAGATGTACAAAC 3763
|| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 2526 TAGCCAGCGTCCACAAAGGCGATACAGACGATGAAGAAGCAATCTTAAAGATGTACAAAC 2585
Query 3764 TGGCATACAGAATCATGGTTGGGTTAAAGGAAGGGGAATACCCGACTGAAGAAGGGAAAT 3823
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2586 AAGCATACAGAATCATGGTTGGGTTGAAGGAAGGGGAATACCCGACTGAAGAAGGGAAAT 2645
Query 3824 GGCTCGCAATGACAGCTTGGAACCGAGCAGCATTGCCCGTGAGGTTAGGACAGTTTGAGA 3883
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 2646 GGCTCGCAATGACAGCTTGGAACCGAGCAGCGTTGCCCGTGAGGCTAGGACAGTTTGAGA 2705
Query 3884 CCGCTAAAAAATGGCTGAGCAT-GGGTTTGGAAATAGCTGAGAAGGTTACAGGTATGGAT 3942
|||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||
Sbjct 2706 CCGCTAAAAAATGGCTGAGCATCGGG-TTGGAAATCGCTGATAAGGTTACAGGTATGGAT 2764
Query 3943 ACTTATAAAGCTTGTATGCAGGATTACTTGGCTGGTTTTCAGACCAAAGTTTCTTCTGCT 4002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2765 ACTTATAAAGCTTGTATGCAGGATTACTTGGCTGGTTTTCAGACCAAAGTTTCTTCTGCT 2824
Query 4003 TAG 4005
|||
Sbjct 2825 TAG 2827
Score = 63.9 bits (34), Expect = 1e-08
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 2842 AAGTTCAAGATCTACCTGCAAAAGAAGGAGCACAGTT 2878
||||||||||||||||||||||||||||| |||||||
Sbjct 1583 AAGTTCAAGATCTACCTGCAAAAGAAGGAACACAGTT 1619
> AT5G48385.1 | Symbols: | FRIGIDA-like protein | chr5:19608560-19612007
FORWARD LENGTH=2234
Length=2234
Score = 1853 bits (1003), Expect = 0.0
Identities = 1074/1109 (97%), Gaps = 2/1109 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGATACTCGGTCAGTTGCTTCGCTCATGGACTCTACATCGTCTAAGATTCAGCAG 60
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 263 ATGGAGGATACTCGGTCAGTTGCTTCACTCATGGACTCTACATCATCCAAGATTCAGCAG 322
Query 61 CTTCAGAAGGCGTTTGCTGAACTTGAAAGTCAGCGTGCGGTAACACTTAATCTGAAGTGG 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 323 CTTCAGAAGGCGTTTGCTGAACTTGAAAGTCAGCGTGCTGTAACACTTAATCTGAAGTGG 382
Query 121 AAGGAACTTGAGGAGCATTTTCATGGGCTTGAGAGGTCTTTGAAGAGACGGTTTCATGAG 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 383 AAGGAACTTGAGGAGCATTTTCATGGGCTTGAGAGGTCTTTGAAGAGAAGGTTTCATGAG 442
Query 181 CTTGAAGATCAAGAAAAAGAGTATGAAACCAAAACAAGGAAAGCTCAAGAACTGTTGGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 CTTGAAGATCAAGAAAAAGAGTATGAAACCAAAACAAGGAAAGCTCAAGAACTGTTGGAG 502
Query 241 AAAAAGAAGGCAGCTGTTGAGGCTAAGGAGAAGGCGTCGCTTGAAAGGCTTCAGAAGAAG 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 503 AAAAAGAAGGCAGCTGTTGAGGCTAAGGAGAAGGCGGCGCTTGAAAGGCTTCAGAAGAAG 562
Query 301 AGAGACGCCGCTATGTTTACTATAAACAGTGCTTTAGATAAGTACAATAACGCTCCCATC 360
|||||||| |||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 563 AGAGACGCAGCTATGTTTACTATAAACAGTGCTTTGGATAAGTATAACAACGCTCCTGTC 622
Query 361 AGTAAACCTTCTGTTGGTGAACGTTGGCCACAAAATCCTGTAGGGGATTCTTCCAATGCC 420
|||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |
Sbjct 623 AGTAAACCTTCTGTTGGTGAACGTTGGCCACAAAATGCTGTAGAGGATTCATCCAATGTC 682
Query 421 TTTGCTGCTGATAGTATTACCGATGATAATCCGGATGGTACTGTGCACGATGTTCAGATC 480
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 683 TTTGCTGCTGATAGTATTACCGATGATAATCCGGATGGTATTGTGCAAGATGTTCAGATC 742
Query 481 TCACCTGTGATGGGAAATTTTGAGGTGAAGGCTTATCCACAGTTGCTGAAACTGTGCGGG 540
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 743 TCACCTGTGATGGGAAATTATGAGGTGAAGGCTTATCCACAGTTACTGAAACTGTGCGGG 802
Query 541 GATATGGACTCAACTGGG-CTCCATAAGTTTGTATCAGATAACCGCAAGAACCTTGCATC 599
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 803 GATATGGACTCAAC-GGGTCTCCATAAGTTTGTATCAGATAACCGCAAGAACCTTGCATC 861
Query 600 ACTAAAGGAGGAGATTCCTATGGCGTTCAGGGCTGCAGCAAACCCAGCCAGCTTAGTGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 ACTAAAGGAGGAGATTCCTATGGCGTTCAGGGCTGCAGCAAACCCAGCCAGCTTAGTGTT 921
Query 660 GGACTCTTTGGAAGGGTTTTACCCCATGGAGGCACCAACTGCTGATGGAAAGAAAGACGC 719
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 922 GGACTCTTTGGAAGGGTTTTACCCTATGGAGGCACCAACTGCTGATGGAAAAAAAGACGC 981
Query 720 TAACCTCTTGGGCATGCGCAGAACCTGTATCATGTTGATGGAGTGCCTTAGCATACTGTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 TAACCTCTTGGGCATGCGCAGAACCTGTATCATGTTGATGGAGTGCCTTAGCATACTGTT 1041
Query 780 ATCTGGTCTGGACCCCAACTCCCTTGCTGCTGTTCTCTCACAGAATGTTAAGCGTAGAGC 839
|||||||||||||| ||||| |||||||| |||||||||||| |||||||||| ||||||
Sbjct 1042 ATCTGGTCTGGACCGCAACTGCCTTGCTGTTGTTCTCTCACAAAATGTTAAGCATAGAGC 1101
Query 840 CAAAAGTATTGCAGAAGGATGGAATCCACTGCTGGAGTCTCTTGACATGGATGCTTGCAA 899
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1102 CAAAACTATTGCAGAAGGATGGAATCCACTGCTGGAATCTCTTGACATGGATGCTTGCAA 1161
Query 900 TGGTAATTCTTTGGAGGCTCATGCATTCCTGCAACTGCTGGCCACTTTTGCTATTGTTGG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TGGTAATTCTTTGGAGGCTCATGCATTCCTGCAACTGCTGGCCACTTTTGCTATTGTTGC 1221
Query 960 TGACTTTAAAGAGGATGAACTCTTAAAGCTGATCCCCATGGTTTCACGTCGCCGTCAGGC 1019
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TGATTTTAAAGAAGATGAACTCTTAAAGCTGATCCCCATGGTTTCACGTCGCCGTCAGGC 1281
Query 1020 AGCTGAGCTCTGCCGTTCACTTGGATTAGCTGGAAAAATGCCTGGTGTGATTGAAGTTCT 1079
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1282 AGCTGAGCTCTGCCGTTCACTTGGATTAGCTGAAAAAATGCCTGGTGTGATTGAAGTTCT 1341
Query 1080 CGTGAACAGTGGAAAACAGATTGATGCGG 1108
|||||||||||||||||||||||||||||
Sbjct 1342 CGTGAACAGTGGAAAACAGATTGATGCGG 1370
Score = 350 bits (189), Expect = 8e-95
Identities = 242/266 (91%), Gaps = 10/266 (4%)
Strand=Plus/Plus
Query 1107 GGATGAGTTCAATGAGCGGGAGCTTACAGGGCTCAAAACCGTGATAAAGTGTATTGAAGA 1166
|||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||
Sbjct 1498 GGATGAGTTCAATGAGCGGGAGCTTATAGGCCTCAAAACCGTTATAAAGTGTATCGAAGA 1557
Query 1167 GCATAGCCTGGAAGAGCAGTACCCAGCTGAGCCACTTCACAAACGAATTCTCCAGCTCGA 1226
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1558 GCATAGCCTGGAAGAGCAGTACCCAGTTGAGCCACTTCACAAACGGATTCTCCAGCTCGA 1617
Query 1227 GAAGGCCAAAGCAGACAAAAAGAGAGCGACAGAGCCCA-CAAAGCCTCAGCCAAAACGAC 1285
||| |||||||| |||||||||||||| ||||| |||| ||| ||||||||||||||||
Sbjct 1618 GAAAGCCAAAGCGGACAAAAAGAGAGCAACAGAACCCATGAAA-CCTCAGCCAAAACGAC 1676
Query 1286 CACGTGGTGCTCAACCCCGAGTGCCC-Gacaacaacaacaaca--a-caTCAA---GACA 1338
|||||||||||||||||||||| | | |||||||||||||||| | || ||| ||||
Sbjct 1677 CACGTGGTGCTCAACCCCGAGT-CACTGACAACAACAACAACATCAACAACAACAAGACA 1735
Query 1339 GGATACGGTAGAGTCATACCTGAAAG 1364
||||||||||||||||| ||||||||
Sbjct 1736 GGATACGGTAGAGTCATCCCTGAAAG 1761
Score = 158 bits (85), Expect = 5e-37
Identities = 100/107 (93%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 1363 AGACTTACACTTTCAGTCCCGCTCCTGCACACGGGAACTTCTACG-GAAACTGCTATCAG 1421
|||||||||| |||| ||| ||||||||||| ||||||||||||| | ||||||||||||
Sbjct 1845 AGACTTACACGTTCAATCCTGCTCCTGCACATGGGAACTTCTACGCG-AACTGCTATCAG 1903
Query 1422 TACCAGGCTCCTCCTCCTCCTGCTTACTTTCACTAGTGATaaaaaaa 1468
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1904 TACCAGGCTCCTCCTCCTCCTCCTTACTTTCACTAGTGATAAAAAAA 1950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 199564099254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5