BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331280
Length=324
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48710.1 | Symbols: | Ubiquitin-like superfamily protein | ... 270 5e-72
AT5G48700.1 | Symbols: | Ubiquitin-like superfamily protein | ... 248 2e-65
> AT5G48710.1 | Symbols: | Ubiquitin-like superfamily protein
| chr5:19755065-19755572 REVERSE LENGTH=345
Length=345
Score = 270 bits (146), Expect = 5e-72
Identities = 225/262 (86%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 1 ATGTCGACGAA-GAGGAGAGCATATGGAAGCAACGATGTGAAGATAGAAGGGAAAAAGCG 59
||||| || || ||| |||| | ||||||||| || |||||||| |||||| |||||||
Sbjct 1 ATGTCAAC-AACGAGCAGAG--T-TGGAAGCAATGAAGTGAAGATGGAAGGGCAAAAGCG 56
Query 60 TAAGGTTGAGTCGGAATCAACTCATGTTACTCTGAAAGTGAAGGGTCAGGATGAGGAAGG 119
||| |||| |||||| |||||||||||||||||||||| ||||||||||| || ||| |
Sbjct 57 TAAAGTTGTGTCGGACCCAACTCATGTTACTCTGAAAGTTAAGGGTCAGGACGAAGAA-G 115
Query 120 A-GTAAAAGTGTTTAAGGTAAGAAGGACTGTTAAGCTGC-AAAAATTGATGGAATTTTAC 177
| | | ||||||| ||| ||||||| || |||||||| |||| |||||||| |||||
Sbjct 116 ATTTTAGAGTGTTTTGGGTGAGAAGGAATGCTAAGCTGCTTAAAA-TGATGGAACTTTAC 174
Query 178 ACCAAAATGAGAGGCGTCGAGTGGGACACATTTCGCTTTCTATTTGAGGGCTCGAGGATT 237
||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 175 ACCAAGATGAGAGGCATCGAGTGGAACACATTTCGCTTTCTATTTGATGGCTCGAGGATT 234
Query 238 CGAGAGTATCATACACTTGATG 259
|||||||||||||||| |||||
Sbjct 235 CGAGAGTATCATACACCTGATG 256
> AT5G48700.1 | Symbols: | Ubiquitin-like superfamily protein
| chr5:19749494-19750013 REVERSE LENGTH=354
Length=354
Score = 248 bits (134), Expect = 2e-65
Identities = 226/269 (84%), Gaps = 11/269 (4%)
Strand=Plus/Plus
Query 1 ATGTCGACGAAGAGGAG-AGCA-T-ATGGAAGCAACGATGTGAAGATAGAAGGGAAAAAG 57
||||| |||||||| || || | | ||||||| || || |||||||| |||||| |||||
Sbjct 1 ATGTCAACGAAGAGCAGTAGTATTCATGGAAGGAATGAAGTGAAGATGGAAGGGGAAAAG 60
Query 58 CGT-AAG--GTTGAGTCGGAATCAACTCATGTTACTCTGAAAGTGAAGGGTCAGGATGAG 114
||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 CGTAAAGACGTTGAGTCGGAATCAACTCATGTTACTCTGAATGTGAAGGGTCAAGATGAG 120
Query 115 GAAGGAGTAAAAGTGTTTAAGGTAAGAAGGACTGTTAAGCTGCAAAAATTGATGGAATTT 174
||||| || ||||| || ||| ||||||| | || ||| | ||||||||||||| |
Sbjct 121 GAAGGGGTTAAAGTCTTCCGGGTGAGAAGGAAGGCTAGGCTTCTTAAATTGATGGAATAT 180
Query 175 TACACCAAAATGAGAGGCGTCGAGTGGGACACATTTCGCTTTCTATTTGA-G--GGCTCG 231
||| |||||||||||||| | |||||| |||||||||||||||||| ||| | |||||
Sbjct 181 TACGCCAAAATGAGAGGCATAGAGTGGAACACATTTCGCTTTCTATCTGATGATGGCTCA 240
Query 232 AGGATTCGAGAGTATCATACA-CTTGATG 259
|| |||||||||||||||||| || ||||
Sbjct 241 AGAATTCGAGAGTATCATACAGCT-GATG 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15080324700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5