BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331293
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48880.2 | Symbols: PKT2, KAT5 | peroxisomal 3-keto-acyl-CoA... 2261 0.0
AT2G33150.1 | Symbols: PKT3, PED1, KAT2 | peroxisomal 3-ketoacy... 403 2e-111
> AT5G48880.2 | Symbols: PKT2, KAT5 | peroxisomal 3-keto-acyl-CoA
thiolase 2 | chr5:19814395-19817204 REVERSE LENGTH=1738
Length=1738
Score = 2261 bits (1224), Expect = 0.0
Identities = 1324/1374 (96%), Gaps = 0/1374 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGCTGTTGAAAGACAAAAGATTTTGCTTCGTCATCTCAATCCAATTTCTTCT 60
||||||| |||| | |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 184 ATGGAGAGAGCTATGGAAAGACAAAAGATATTGCTTCGTCATCTCAATCCAGTTTCTTCT 243
Query 61 ACTAATTCTTCTCTTAATCATGAACCTTCTCTTTTGTCTCTTGTGAATTGTGCTTCTGAG 120
|||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 244 TCTAATTCTTCTCTTAAACATGAACCTTCTCTTCTGTCTCCTGTGAATTGTGTTTCTGAA 303
Query 121 GTTTCCCCAATGGCTGCTTTTGGAGATGACATTGTGATTGTAGCGGCTTATCGTACCGCC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 304 GTTTCCCCAATGGCTGCTTTTGGAGATGACATTGTGATTGTAGCGGCATATCGTACCGCC 363
Query 181 ATTTGCAAAGCGAGACGTGGAGGTTTCAAAGACACTCTTCCTGATGATCTTCTAGCTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 364 ATTTGCAAAGCGAGACGTGGAGGTTTCAAAGACACTCTTCCTGATGATCTTCTTGCTTCT 423
Query 241 GTTCTTAAGGCTGTAGTGGAAAGAACATCTTTGGATCCAAGTGAAGTTGGGGATATCGTT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 424 GTTCTTAAGGCTGTAGTGGAAAGAACATCTTTGGATCCAAGTGAAGTTGGTGATATCGTT 483
Query 301 GTTGGTACCGTGATAGCGCCCGGTTCTCAGAGAGCAATGGAGTGTAGAGTAGCAGCTTAT 360
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 484 GTTGGTACCGTGATAGCGCCTGGTTCTCAGAGAGCAATGGAGTGTAGAGTTGCAGCTTAT 543
Query 361 TTTGCTGGTTTTCCTGACACCGTGCCAGTTAGAACTGTCAATAGACAATGCTCATCAGGA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTTGCTGGTTTTCCTGACTCCGTGCCAGTTAGAACTGTCAATAGACAATGCTCATCAGGA 603
Query 421 CTACAAGCAGTTGCTGATGTTGCTGCTTCCATTAGAGCTGGTTATTACGACATTGGTATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CTACAAGCAGTTGCTGATGTTGCTGCTTCCATTAGAGCTGGTTATTACGACATTGGTATT 663
Query 481 GGTGCTGGAGTGGAATCAATGTCAACTGATCATATTCCTGGAGGCGGCTTTCATGCCTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 664 GGTGCTGGAGTGGAATCAATGTCAACTGATCATATTCCTGGAGGCGGCTTTCATGGCTCT 723
Query 541 AATCCAAGAGCACAAGATTTCCCGAAAGCCCGTGATTGTTTGCTTCCAATGGGAATTACT 600
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 724 AATCCAAGAGCACAGGATTTCCCAAAAGCCCGTGATTGTTTGCTTCCAATGGGAATTACT 783
Query 601 TCTGAAAACGTTGCAGAAAGATTCGGTGTCACAAGAGAAGAGCAAGATATGGCTGCGGTG 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 784 TCTGAAAACGTTGCAGAAAGGTTCGGTGTCACAAGAGAAGAGCAAGATATGGCTGCGGTG 843
Query 661 GAGTCTCACAAACGCGCTGCAGCTGCTATCGCGTCTGGTAAACTCAAGGATGAAATAATT 720
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 844 GAGTCTCACAAACGCGCTGCAGCTGCAATCGCGTCTGGTAAACTCAAGGATGAAATCATT 903
Query 721 CCTGTTGCTACTAAGATCGTGGACCCCGAGACTAAAGCAGAGAAGGCAATCGTTGTATCT 780
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 904 CCTGTTGCTACTAAGATTGTGGACCCTGAGACTAAAGCAGAGAAGGCAATCGTCGTATCT 963
Query 781 GTTGATGACGGTGTACGTCCAAACTCAAACTTGGCAGATCTGGCAAAGCTGAAGACCGTC 840
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 964 GTTGATGACGGTGTACGTCCAAACTCAAACATGGCAGATTTGGCAAAGCTGAAGACTGTC 1023
Query 841 TTTAAACAGAACGGTTCCACCACAGCTGGTAATGCTAGCCAGATCAGTGATGGTGCTGGA 900
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1024 TTTAAACAGAACGGTTCCACCACAGCTGGCAATGCTAGTCAGATCAGTGATGGTGCTGGA 1083
Query 901 GCTGTACTGCTAATGAAGAGAAGTTTGGCAATGAAGAAGGGACTTCCCATTCTTGGAGTA 960
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1084 GCAGTACTGCTAATGAAGAGAAGTTTGGCTATGAAGAAGGGACTTCCCATTCTTGGAGTA 1143
Query 961 TTCAGGAGTTTTGCTGTTACTGGTGTGGATCCATCTGTAATGGGTATCGGTCCGGCTGTT 1020
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 1144 TTCAGGAGTTTTGCTGTTACTGGTGTGGAACCATCTGTAATGGGTATTGGTCCAGCTGTT 1203
Query 1021 GCCATTCCCGCTGCAACTAAACTTGCAGGCCTCAACGTCAGCGATATTGATCTATTCGAG 1080
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1204 GCCATTCCCGCTGCAACTAAGCTCGCAGGGCTCAACGTCAGCGATATTGATCTATTCGAG 1263
Query 1081 ATCAATGAGGCATTTGCATCTCAGTATGTGTACTGTTGCAAAAAGCTAGAGCTAGATATG 1140
|||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||
Sbjct 1264 ATCAATGAGGCATTTGCATCTCAGTATGTGTACTCTTGCAAGAAGTTAGAGCTGGATATG 1323
Query 1141 GAAAAGGTCAATGTTAATGGAGGAGCCATTGCTATTGGCCATCCTCTGGGTGCTACAGGA 1200
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1324 GAAAAGGTCAATGTTAATGGAGGAGCCATTGCTATTGGCCATCCCCTGGGTGCTACAGGA 1383
Query 1201 GCTCGATGTGTTGCGACATTGTTGCATGAGATGAAGCGGAGAGGAAAAGATTGCCGCTTT 1260
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1384 GCTCGATGTGTTGCGACATTGTTGCACGAGATGAAGCGGAGAGGAAAAGATTGCCGCTTT 1443
Query 1261 GGAGTAATCTCAATGTGCATAGGCACTGGAATGGGAGCTGCAGCTGTTTTTGAGAGGGGG 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GGAGTAATCTCAATGTGCATAGGCACTGGAATGGGAGCTGCAGCTGTTTTTGAGAGGGGA 1503
Query 1321 GACTCTGTTGATAACTTGTCCAACGCTCGAGTGGCTAATGGCGATGGTCATTAG 1374
||||||||||||||||||||||||||||| |||||||| || ||| ||||||||
Sbjct 1504 GACTCTGTTGATAACTTGTCCAACGCTCGTGTGGCTAACGGGGATAGTCATTAG 1557
> AT2G33150.1 | Symbols: PKT3, PED1, KAT2 | peroxisomal 3-ketoacyl-CoA
thiolase 3 | chr2:14047478-14051140 REVERSE LENGTH=1882
Length=1882
Score = 403 bits (218), Expect = 2e-111
Identities = 804/1077 (75%), Gaps = 80/1077 (7%)
Strand=Plus/Plus
Query 277 CCAAGTGAAGTTGGGGATATCGTTGTTGGTACCGTGATAGCGCCCGGTTCTCAGAGAG-C 335
||||||||||| || || || ||||| ||||| || | || || || |||||||||| |
Sbjct 437 CCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGGCACCTGGATCTCAGAGAGCC 496
Query 336 AATGGAGTGTA-GAGTAGCAGC-TTATTTTGCTGGTTTTCCTGACACCGTGCCAGTTAGA 393
| | || || | || | || || || | ||||||||| ||||| |||||| | || |||
Sbjct 497 AGT-GAATGCAGGA-TGGCTGCGTT-CTATGCTGGTTTCCCTGAAACCGTGGCTGTCAGA 553
Query 394 ACTGTCAATAGACAATGCTCATCAGGACTACAAGCAGTTGCTGATGTTGCTGCTTCCATT 453
||||| |||||||| |||||||| || || || || ||||||||||| || ||| |||||
Sbjct 554 ACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATT 613
Query 454 AGAGCTGG-TTATTACGACATTGGTATTGGTGCTGGAGTGGAATCAATGTCAACTGAT-C 511
| ||| || || ||| ||||||||||| || ||||| |||| || ||| | || || |
Sbjct 614 AAAGCGGGATT-TTATGACATTGGTATCGGGGCTGGTTTGGAGTCCATGACTACCAATCC 672
Query 512 ATAT-TCCT-GGAGGCGGCTTTCATGCCTCTAATCCAAGAGCACAAG-A-TTTCCCGA-A 566
| || | | ||| | || ||| | || || || || | ||| | ||| | | |
Sbjct 673 A-ATGGCATGGGAAG-GG---TCA-G--TC-AA-CCCAGCGGTGAAGAAGTTT-GC-ACA 720
Query 567 AGC-CCGTGATTGT-TTGCTTCCAATGGGAATTACTTCTGAAAACGTTGCAGAAAGATTC 624
||| | | ||||| || ||||| ||||| |||| || ||||| || ||| || | ||
Sbjct 721 AGCGCAG-AATTGTCTT-CTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACGCTTT 778
Query 625 GGTGTCACAAGAG-AAGAGCAAGAT-ATGGCTGCGGTGGAGTCTCACA-AACGCGCTGCA 681
|||||| |||| | | ||||||||| | ||||| || || || |||| || | || ||
Sbjct 779 GGTGTCTCAAG-GCAGGAGCAAGATCA-AGCTGCTGTTGACTCGCACAGAAAG-GCAGCT 835
Query 682 GCTGCTATC-GCGT-CTGGTAAACTCAAGGATGAAATAATTCCTGTTGCTACTAAGATCG 739
||||||| | || | |||||||| |||||||||| || ||||||||| || ||| | |
Sbjct 836 GCTGCTA-CTGC-TGCTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTG 893
Query 740 TGGACCCCG-AGACTAAAGCA-GAGAAGGCAATCGTTGTATCTGTTGATGACGGTGTACG 797
| || |||| ||||| | | ||||| | || || ||||||||||| ||| | ||
Sbjct 894 TTGA-CCCGAAGACTGGTG-ATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCG 951
Query 798 TCCAAACTCA-AACT-TGGCAGATC-TGGCAAAGCTGAAGACC-GTCTTTAA-ACAGAAC 852
|| ||| || |||| | || || ||| ||||||||| || || ||||| | || |
Sbjct 952 ACC-AAC-CACAACTCTTGCTTCTCTTGG-GAAGCTGAAG-CCAGTGTTTAAGA-AGGAT 1006
Query 853 GGTTCCACCACAGCTGGTAATGCTAGCC-AGATCAGTGATGGTGCTGGAGCTGTACTGCT 911
|| |||| || ||||| ||| | |||| || | ||||||||||| ||||| || || ||
Sbjct 1007 GGCACCACTACTGCTGGAAATTCCAGCCAAG-TAAGTGATGGTGCAGGAGCGGTTCTCCT 1065
Query 912 AATGAAGAGAAGT-TTGGCAATG-AAGAAGGGACTTCCCATTCTTGGAGTATTCAGGAGT 969
||||||||||||| || |||||| || || ||||||||| ||||||| ||||||||||
Sbjct 1066 AATGAAGAGAAGTGTT-GCAATGCAA-AAAGGACTTCCCGTTCTTGGTGTATTCAGGACA 1123
Query 970 TTTGCTGTTA-CTGGTGTGGATCCAT-CTGTAATGGGTATCGGTCCGGCTGTTGCCATTC 1027
||||||| | |||||| || || | | | |||||||||||||| || ||||||||||
Sbjct 1124 TTTGCTG-CAGTTGGTGTTGA-CCCTGCAATCATGGGTATCGGTCCAGCAGTTGCCATTC 1181
Query 1028 CCGCTGCAACTAA-ACTTGCAGGCCT-CAACGTCAGCGATATTGATC-TATTCGAGATCA 1084
| |||||| ||| | || || | ||| | | || || || | | || |||||||
Sbjct 1182 CTGCTGCAGTTAAGGC-GGCTGGTTTAGAACTTGA-TGACATCGA-CTTGTTTGAGATCA 1238
Query 1085 ATGAGGCATTTGCATCTCAGTATGTGTACTGTTGCAA-AAAGCTAG-AGCTAGAT--ATG 1140
||||||||||||||||||||| ||| || || | || ||| | | | || || | |
Sbjct 1239 ATGAGGCATTTGCATCTCAGTTTGTTTATTGCCGTAACAAAT-TGGGA-CTTGACCCA-G 1295
Query 1141 -GAAAAGGTCAATGTTAATGGAGGAGCCATTGCTATTGGCCATCCTCTGGGTGCTACAGG 1199
||||| ||||||| || ||||| || || || || ||||||||| |||| ||||||||
Sbjct 1296 AGAAAA--TCAATGTCAACGGAGGTGCAATGGCCATAGGCCATCCTTTGGGCGCTACAGG 1353
Query 1200 AGCTCGATGTGTTGCGACATTGTTGCATGAGATGAAGCGGAGAGGAAAAGATTGCCGCTT 1259
||| || |||||||| ||||||||||| |||||||| || | || ||||| ||||| ||
Sbjct 1354 AGCGCGTTGTGTTGCTACATTGTTGCACGAGATGAAACGCCGTGGTAAAGACTGCCGTTT 1413
Query 1260 TGGAGTAATCTCAATGTGCATAGGCACTGGAATGGGAGCTGCAGCTGTTTTTGAGAG 1316
||||||| | ||||||||||| || || || ||||| || |||||||| ||||||||
Sbjct 1414 TGGAGTAGTGTCAATGTGCATTGGGACGGGGATGGGTGCAGCAGCTGTGTTTGAGAG 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5